summaryrefslogtreecommitdiffstats
path: root/2022/info/science-after.md
blob: ba0702f565060e029532f63bf6d49e1d0ff09ec7 (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
<!-- Automatically generated by emacsconf-publish-after-page -->


<a name="science-mainVideo-transcript"></a>
# Transcript

[[!template new="1" text="""Hello everyone, I'm Vidianos.""" start="00:00:00.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""Today I'm going to show you""" start="00:00:02.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""how I write and organize""" start="00:00:03.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""my literature notes using Emacs.""" start="00:00:04.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""I take my notes using Zettelkasten,""" start="00:00:06.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""which you may or may not have heard.""" start="00:00:08.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""It is about taking small atomic notes""" start="00:00:11.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""and linking them one another""" start="00:00:13.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""to create your so-called second brain.""" start="00:00:15.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""Here is mine.""" start="00:00:17.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""This is a graph of all the notes""" start="00:00:19.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""I have accumulated the last few years.""" start="00:00:20.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""It has various types of notes,""" start="00:00:22.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""but we're mainly going to focus on""" start="00:00:25.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""literature notes today.""" start="00:00:25.960" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""Here are the contents of my talk.""" start="00:00:28.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""We're going to start""" start="00:00:29.640" video="mainVideo-science" id="subtitle"]]
[[!template text="""with bibliography management,""" start="00:00:30.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is how I take bibliography""" start="00:00:31.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""from the web and import it to Emacs.""" start="00:00:33.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""Then we're going to talk about""" start="00:00:35.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""how I create literature notes""" start="00:00:37.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""using a custom org-roam-bibtex template I have.""" start="00:00:38.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""And after talking about that,""" start="00:00:42.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""we can talk about how I write literature notes,""" start="00:00:43.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is through annotating an article""" start="00:00:46.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""using org-noter. Org-noter is a package""" start="00:00:48.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""that allows you to annotate PDFs""" start="00:00:51.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""using the Org format""" start="00:00:53.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""and creates a supplementary Org file to your PDF.""" start="00:00:55.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""Then we're going to talk about""" start="00:00:59.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""adding the literature to your Zettelkasten,""" start="00:01:00.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is a simple but important topic,""" start="00:01:03.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""and how you can write permanent notes""" start="00:01:06.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""based on the info you obtain from this literature.""" start="00:01:08.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""Lastly, we're going to focus on""" start="00:01:11.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""the organization problem""" start="00:01:13.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""one might find when having a lot of literature""" start="00:01:15.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""for an assignment or an article or something,""" start="00:01:17.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""and how I have tried to solve this""" start="00:01:21.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""with my package Zetteldesk.""" start="00:01:22.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""This isn't the perfect solution,""" start="00:01:24.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""but it is what I have, and I really like it.""" start="00:01:26.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""Finally, we're going to talk about""" start="00:01:29.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""how to compose the final article""" start="00:01:30.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""that you want to produce""" start="00:01:33.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""using this literature""" start="00:01:35.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""with the technique described""" start="00:01:36.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""in the rest of this talk.""" start="00:01:38.640" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""So let's begin the talk""" start="00:01:40.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""with bibliography management.""" start="00:01:42.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""Zotero is the bibliography manager I use.""" start="00:01:44.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""It is very simple to store articles with it,""" start="00:01:47.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""and it exports to .bib,""" start="00:01:49.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""integrating with packages""" start="00:01:50.680" video="mainVideo-science" id="subtitle"]]
[[!template text="""such as org-roam-bibtex and ivy-bibtex.""" start="00:01:52.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""When researching, I typically find""" start="00:01:54.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""a long list of articles from a search engine.""" start="00:01:56.680" video="mainVideo-science" id="subtitle"]]
[[!template text="""I open the titles which have interesting titles""" start="00:02:00.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""through their abstracts""" start="00:02:03.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""and save to Zotero those whose abstracts""" start="00:02:05.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""are the most relevant to what I want.""" start="00:02:07.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""From these articles,""" start="00:02:10.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""I typically won't read all of them""" start="00:02:11.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""because they're a lot,""" start="00:02:13.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""but I will select a few,""" start="00:02:14.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""once I have collected as many as I want.""" start="00:02:17.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""Zotero acts as a way to store everything""" start="00:02:21.640" video="mainVideo-science" id="subtitle"]]
[[!template text="""that might be interesting,""" start="00:02:24.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""while Emacs and my Zettelkasten""" start="00:02:25.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""stores everything that is definitely interesting,""" start="00:02:28.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""and I have read it already.""" start="00:02:30.960" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""And then we can move to""" start="00:02:35.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""how I create literature notes.""" start="00:02:36.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""I set the default action of ivy-bibtex""" start="00:02:38.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""to ivy-bibtex-edit-notes,""" start="00:02:41.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""which will prompt-- which""" start="00:02:43.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""with org-roam-bibtex-mode active,""" start="00:02:44.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""prompts you for an org-capture template""" start="00:02:46.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""when selecting something""" start="00:02:48.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""if the node doesn't exist,""" start="00:02:50.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""or takes you to the existing node.""" start="00:02:52.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""And obviously you need to have this here,""" start="00:02:54.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""to set the default action""" start="00:02:58.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""that was already there""" start="00:03:00.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""to a letter.""" start="00:03:02.600" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""Then we can move to my org-roam reference template,""" start="00:03:04.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""using org-roam-bibtex.""" start="00:03:08.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""This isn't so complicated,""" start="00:03:11.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""but it has some important stuff""" start="00:03:12.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""I want to highlight.""" start="00:03:14.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""Save it to the ref directory,""" start="00:03:14.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""so I can remember where it is,""" start="00:03:17.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""and it's classified as a literature note.""" start="00:03:19.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""The file name is the cite key,""" start="00:03:23.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is easy and small,""" start="00:03:25.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""but the title is the actual article's title.""" start="00:03:27.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""Give it a tag of the entry-type;""" start="00:03:30.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""this is typically &quot;article,&quot;""" start="00:03:32.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""but it's easy to sort things this way""" start="00:03:35.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""because not all literature notes are articles.""" start="00:03:37.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""And then give the keywords""" start="00:03:41.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""that are given by Zotero, because why not?""" start="00:03:43.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""Tags here are tags from Zettelkasten.""" start="00:03:47.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""These are the links to""" start="00:03:51.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""other files which are relevant,""" start="00:03:53.640" video="mainVideo-science" id="subtitle"]]
[[!template text="""but its initialization is empty, obviously.""" start="00:03:55.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""And then this heading is where""" start="00:03:58.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""all the magic happens.""" start="00:03:59.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""The name is just not really so relevant;""" start="00:04:00.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""I just needed something that made sense.""" start="00:04:04.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""The properties are what matters,""" start="00:04:07.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""and mainly this one here.""" start="00:04:10.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""The ${file} attribute finds""" start="00:04:12.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""the file of this specific literature""" start="00:04:18.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""and makes sure that org-noter works""" start="00:04:24.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""by default here.""" start="00:04:27.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""As I'm going to show you in a moment,""" start="00:04:29.640" video="mainVideo-science" id="subtitle"]]
[[!template text="""this way [of] initializing the literature note,""" start="00:04:32.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""org-noter works by default.""" start="00:04:34.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""That's all, basically, for the template.""" start="00:04:37.000" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""This is the point of the talk""" start="00:04:40.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""where we reach the first demo.""" start="00:04:42.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""This is about opening ivy-bibtex,""" start="00:04:44.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""selecting an article I want to annotate,""" start="00:04:47.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""initializing the literature note.""" start="00:04:50.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""We can see that everything""" start="00:04:53.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""is inserted in for me,""" start="00:04:55.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""and if I open org-noter on this heading,""" start="00:04:56.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""it opens the article, as expected.""" start="00:05:01.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""I can read the article,""" start="00:05:03.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""I can say I want to""" start="00:05:06.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""annotate something here.""" start="00:05:08.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""Obviously, annotation is not that simple as here,""" start="00:05:20.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""but I don't really have the time""" start="00:05:24.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""to actually annotate an article live.""" start="00:05:26.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""But you can keep going, and it's a good setup.""" start="00:05:28.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""Then close org-noter,""" start="00:05:34.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""and let's go presentation again.""" start="00:05:39.880" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""Moving on, this section is some stuff""" start="00:05:40.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""about my annotation process.""" start="00:05:44.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""As I said, there is not enough time for me""" start="00:05:45.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""to actually annotate an article live,""" start="00:05:49.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""but here are some things about it.""" start="00:05:51.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""First, is that I annotate with org-noter,""" start="00:05:53.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""which I absolutely love.""" start="00:05:55.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""It is great for annotations""" start="00:05:56.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""because you do them in org,""" start="00:05:59.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is an amazing format""" start="00:06:02.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""and gives you a lot of flexibility,""" start="00:06:03.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""such as adding to the Zettelkasten,""" start="00:06:05.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""being initialized by a capture template,""" start="00:06:07.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""and other things.""" start="00:06:11.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""But also, you don't need to look for""" start="00:06:13.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""the notes inside the PDF,""" start="00:06:15.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is a problem you can have""" start="00:06:17.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""if you annotate on the PDF,""" start="00:06:19.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""and it is very annoying in my opinion.""" start="00:06:20.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""So I prefer having these notes,""" start="00:06:23.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""and I can only focus on them,""" start="00:06:26.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""but I can also see where they refer.""" start="00:06:27.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""The other scenarios are not so good.""" start="00:06:29.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""Annotating on the PDF,""" start="00:06:33.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""you search for it,""" start="00:06:35.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""and if you don't know which section it refers to,""" start="00:06:36.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""then you need to look about it,""" start="00:06:41.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""and that is very tiring.""" start="00:06:42.760" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""Also, I am always annotating in English.""" start="00:06:44.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""This is not my mother tongue,""" start="00:06:48.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""but it helps me avoid""" start="00:06:50.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""the necessary mental overhead""" start="00:06:52.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""of translating while reading.""" start="00:06:53.680" video="mainVideo-science" id="subtitle"]]
[[!template text="""I want to pay attention to what I read""" start="00:06:55.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""and not to translate stuff.""" start="00:06:57.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""I will translate later.""" start="00:06:59.680" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""And when finishing an article,""" start="00:07:02.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""I write a mini-abstract myself,""" start="00:07:05.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""which contains what I think about the article.""" start="00:07:07.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""It doesn't need to be much,""" start="00:07:10.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""it's usually like 3 or 4 paragraphs,""" start="00:07:11.640" video="mainVideo-science" id="subtitle"]]
[[!template text="""and it shows things that are useful in the article,""" start="00:07:14.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""and what is mentioned that matters to me.""" start="00:07:18.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""So I can look back at it,""" start="00:07:21.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""and it is very easy for me to find""" start="00:07:22.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""what I got from this article,""" start="00:07:24.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""so where I will cite it on my actual project.""" start="00:07:26.600" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""Then last thing you need to do""" start="00:07:30.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""is add a note to your Zettelkasten.""" start="00:07:33.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""This is very easy due to it being in an org format.""" start="00:07:35.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""You can just have it in the org-roam directory,""" start="00:07:38.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""which it automatically goes to,""" start="00:07:41.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""and link it to other relevant notes,""" start="00:07:43.640" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is its index""" start="00:07:46.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""because everything in my Zettelkasten""" start="00:07:48.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""(at least) has an index,""" start="00:07:50.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""but also every other permanent note""" start="00:07:51.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""whose contents are in one way or another""" start="00:07:54.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""mentioned inside the article.""" start="00:07:56.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""This way the article is in a network with notes""" start="00:07:58.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""that are similar to it.""" start="00:08:00.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""Then we move on to the second demo,""" start="00:08:02.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is about a full-fledged literature note.""" start="00:08:05.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""We can go on org-roam-node-find,""" start="00:08:08.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""search for references,""" start="00:08:11.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""go to this, and you can see""" start="00:08:13.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""it is linked to other notes.""" start="00:08:15.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""And here is the mini-abstract,""" start="00:08:17.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""and here are my notes on it.""" start="00:08:20.040" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""The last thing you need to do""" start="00:08:21.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""when creating a literature note,""" start="00:08:27.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""is obviously create permanent notes""" start="00:08:29.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""based on what you read.""" start="00:08:31.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""If you never create these literature notes,""" start="00:08:32.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""you will never get new information.""" start="00:08:35.680" video="mainVideo-science" id="subtitle"]]
[[!template text="""So for your Zettelkasten to grow,""" start="00:08:37.680" video="mainVideo-science" id="subtitle"]]
[[!template text="""you need to create such notes.""" start="00:08:40.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""This means that the subject you are researching""" start="00:08:42.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""is not just literature notes""" start="00:08:45.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""but has well-structured permanent notes,""" start="00:08:47.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is what you will actually read.""" start="00:08:50.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""You typically only read literature notes""" start="00:08:52.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""to see what gets cited where.""" start="00:08:55.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""What you will mostly read""" start="00:08:57.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""is these permanent notes""" start="00:08:58.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""that you create from this knowledge.""" start="00:08:59.840" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""So finally we are at the last part of the talk,""" start="00:09:01.680" video="mainVideo-science" id="subtitle"]]
[[!template text="""which is about organizing literature notes.""" start="00:09:05.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""And this is in my opinion""" start="00:09:07.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""the most interesting part""" start="00:09:09.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""because it is very unique.""" start="00:09:10.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""It uses a package I wrote myself,""" start="00:09:12.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""and it doesn't have as much usage""" start="00:09:14.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""as the rest of the things I described so far.""" start="00:09:18.320" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""So what is the problem you might find?""" start="00:09:21.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""Indeed, if you read a lot of things,""" start="00:09:24.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""you have a large collection of notes,""" start="00:09:27.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""and it's not the only thing you will think about.""" start="00:09:30.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""However, you do need to""" start="00:09:33.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""justify everything with citations,""" start="00:09:36.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""so you need to remember everything""" start="00:09:37.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""you read in these notes.""" start="00:09:39.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""You have done a lot of work,""" start="00:09:41.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""but there is still a lot for you""" start="00:09:43.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""to reach your final manuscript.""" start="00:09:45.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""Except if there was a handy little way""" start="00:09:47.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""to combine everything""" start="00:09:50.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""and sort it in a very easy way.""" start="00:09:52.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""Well, there is,""" start="00:09:55.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""and I think it came out pretty well.""" start="00:09:56.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""It's zetteldesk.el.""" start="00:10:00.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""It was inspired by this quote here""" start="00:10:01.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""from How to Take Smart Notes.""" start="00:10:05.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""Sönke Ahrens here talked about a desktop,""" start="00:10:06.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""which you have all the literature""" start="00:10:09.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""you want in that desktop,""" start="00:10:13.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""and you try to bring it in order.""" start="00:10:16.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""And by doing that,""" start="00:10:20.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""you can improve your ideas""" start="00:10:22.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""and have a structure""" start="00:10:24.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""so that your manuscript will then be""" start="00:10:27.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""very, very easy to write.""" start="00:10:30.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""And as I say here, in trying to do this,""" start="00:10:33.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""I made something much more general""" start="00:10:36.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""than it needed to be, so yeah,""" start="00:10:38.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""you can use it for many other things.""" start="00:10:41.560" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""But before I show you some things about it,""" start="00:10:43.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""I want to introduce you to what a desktop is.""" start="00:10:46.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""It's essentially a collection of the knowledge""" start="00:10:49.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""you want to be able to see.""" start="00:10:53.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""You add things to your Zetteldesk,""" start="00:10:54.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""and using filter functions,""" start="00:10:58.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""you only see these notes and nothing else,""" start="00:11:01.680" video="mainVideo-science" id="subtitle"]]
[[!template text="""which in my opinion is very handy.""" start="00:11:04.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""So having said that,""" start="00:11:07.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""we can see these things in action""" start="00:11:10.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""for the final demo of the talk.""" start="00:11:12.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""This is the third one.""" start="00:11:14.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""I will go to an index file of mine.""" start="00:11:15.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""This is 3D printing,""" start="00:11:20.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""an assignment I had last semester.""" start="00:11:21.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""And this has 28 backlinks,""" start="00:11:23.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""so a lot of things that I looked at""" start="00:11:27.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""for this assignment.""" start="00:11:30.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""I can say I want to add""" start="00:11:31.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""the current note's backlinks to the Zetteldesk,""" start="00:11:33.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""and now I have a filtered version""" start="00:11:35.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""of org-roam-node-find defined,""" start="00:11:38.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""which only lists these 29 notes.""" start="00:11:40.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""Very nice, right?""" start="00:11:42.000" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""I can also filter just the literature notes,""" start="00:11:45.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""which can also use other UIs beside org-roam,""" start="00:11:49.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""such as, for example,""" start="00:11:56.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""one I use a lot is the ivy-bibtex command.""" start="00:11:57.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""This takes a lot of time,""" start="00:12:00.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""much longer than the org-roam one,""" start="00:12:03.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""but has them in this UI,""" start="00:12:04.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""which in a lot of cases is more useful for me.""" start="00:12:06.480" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""The other very important thing is inserting these.""" start="00:12:09.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""For example, say I want to insert a permanent note,""" start="00:12:15.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""such as this.""" start="00:12:20.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""Its title will become a top-level heading,""" start="00:12:21.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""and everything else will be inserted as expected.""" start="00:12:25.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""But the most important thing for us""" start="00:12:29.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""is inserting literature, right?""" start="00:12:35.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""This is done with this command,""" start="00:12:37.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""and let's say I want to insert this.""" start="00:12:39.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""The title again becomes a heading,""" start="00:12:42.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""and this is the article title also.""" start="00:12:48.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""I store the cite key here,""" start="00:12:50.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""and everything else about it is also here.""" start="00:12:53.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""And I can add others,""" start="00:12:56.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""for example, this and this.""" start="00:12:58.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""And we have all of them here.""" start="00:13:01.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""I see it says this is the basic,""" start="00:13:09.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""so let's put it at the top.""" start="00:13:11.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""And then maybe I want to put this last.""" start="00:13:12.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""And this way, you can sort things,""" start="00:13:18.840" video="mainVideo-science" id="subtitle"]]
[[!template text="""and typically, on the other side,""" start="00:13:24.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""I have a manuscript,""" start="00:13:26.320" video="mainVideo-science" id="subtitle"]]
[[!template text="""and I look at what order""" start="00:13:27.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""I want to have things in""" start="00:13:30.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""and sort the articles and the permanent notes""" start="00:13:31.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""in a way so that each section can have""" start="00:13:34.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""its own citations and its own notes,""" start="00:13:38.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""which makes writing, again, very easy, in my opinion.""" start="00:13:41.800" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""Finally, let's go to composing the final article.""" start="00:13:46.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""This is our goal: we wrote and organized""" start="00:13:53.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""all these literature notes""" start="00:13:57.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""to put them in your final project.""" start="00:13:58.360" video="mainVideo-science" id="subtitle"]]
[[!template text="""This might be an assignment""" start="00:14:00.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""or an actual scientific article.""" start="00:14:01.880" video="mainVideo-science" id="subtitle"]]
[[!template text="""It is apparent that you have done""" start="00:14:04.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""a lot of work for this so far,""" start="00:14:07.480" video="mainVideo-science" id="subtitle"]]
[[!template text="""but you don't need to do a lot more.""" start="00:14:09.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""In my opinion, this is the easiest part""" start="00:14:12.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""of the whole workflow.""" start="00:14:14.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""People consider final article composition hard,""" start="00:14:15.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""but if you've done all these steps,""" start="00:14:19.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""you already have everything you want""" start="00:14:21.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""to add in the article from your notes.""" start="00:14:23.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""It's already there,""" start="00:14:25.640" video="mainVideo-science" id="subtitle"]]
[[!template text="""a lot of things are copy-pasted,""" start="00:14:27.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""it's all in a coherent order,""" start="00:14:30.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""connections are to an extent already there,""" start="00:14:34.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""and you know what citation goes where,""" start="00:14:38.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""so you can justify everything you write.""" start="00:14:41.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""The actual draft isn't there,""" start="00:14:44.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""but it is very easy""" start="00:14:46.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""because now you just write things as you see them""" start="00:14:48.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""in your desktop and connect them.""" start="00:14:52.600" video="mainVideo-science" id="subtitle"]]
[[!template text="""Connections are basic--""" start="00:14:54.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""connections and making the article good, obviously,""" start="00:14:56.960" video="mainVideo-science" id="subtitle"]]
[[!template text="""are basically the only thing you need to worry,""" start="00:14:59.440" video="mainVideo-science" id="subtitle"]]
[[!template text="""but those are very important""" start="00:15:02.400" video="mainVideo-science" id="subtitle"]]
[[!template text="""because others will only see the final manuscript,""" start="00:15:05.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""so if that's not good,""" start="00:15:09.040" video="mainVideo-science" id="subtitle"]]
[[!template text="""then the whole assignment is not good, obviously.""" start="00:15:11.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""So it's not like your work is done,""" start="00:15:14.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""it's just very easy.""" start="00:15:17.520" video="mainVideo-science" id="subtitle"]]
[[!template new="1" text="""And with that, I hope you liked my talk""" start="00:15:19.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""because it is coming to an end now.""" start="00:15:23.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""I want to thank you for your time;""" start="00:15:25.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""I hope you enjoyed it.""" start="00:15:27.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""You can feel free to email me at this address;""" start="00:15:29.680" video="mainVideo-science" id="subtitle"]]
[[!template text="""it has also been on every slide since the beginning.""" start="00:15:32.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""I also have the GitHub for zetteldesk.el here,""" start="00:15:35.640" video="mainVideo-science" id="subtitle"]]
[[!template text="""and I will be available for questions.""" start="00:15:40.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""I will be viewing both the pad and the IRC""" start="00:15:42.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""and will do a live Q&A after this. See you.""" start="00:15:45.000" video="mainVideo-science" id="subtitle"]]
[[!template text="""Actually, before I go,""" start="00:15:49.160" video="mainVideo-science" id="subtitle"]]
[[!template text="""let's show you the GitHub for zetteldesk.el.""" start="00:15:51.280" video="mainVideo-science" id="subtitle"]]
[[!template text="""Here's the README; if you're interested on it,""" start="00:15:54.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""you can see more about it,""" start="00:15:57.120" video="mainVideo-science" id="subtitle"]]
[[!template text="""and also I have a very in-depth wiki about it""" start="00:15:58.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""with 11 pages, and talking about everything""" start="00:16:02.560" video="mainVideo-science" id="subtitle"]]
[[!template text="""that happens here.""" start="00:16:06.520" video="mainVideo-science" id="subtitle"]]
[[!template text="""A lot of what we discussed is in this section""" start="00:16:08.080" video="mainVideo-science" id="subtitle"]]
[[!template text="""about literature notes.""" start="00:16:11.760" video="mainVideo-science" id="subtitle"]]
[[!template text="""These documents go a lot more in-depth""" start="00:16:12.920" video="mainVideo-science" id="subtitle"]]
[[!template text="""in how Zetteldesk works, and also how to use it,""" start="00:16:17.200" video="mainVideo-science" id="subtitle"]]
[[!template text="""so if you're interested, feel free to read them,""" start="00:16:22.800" video="mainVideo-science" id="subtitle"]]
[[!template text="""and if you have any problems,""" start="00:16:27.720" video="mainVideo-science" id="subtitle"]]
[[!template text="""you can open an issue about it;""" start="00:16:30.240" video="mainVideo-science" id="subtitle"]]
[[!template text="""I will be very active. Thank you.""" start="00:16:31.840" video="mainVideo-science" id="subtitle"]]



Captioner: hannah
Questions or comments? Please e-mail [vidianosgiannitsis@gmail.com](mailto:vidianosgiannitsis@gmail.com?subject=Comment%20for%20EmacsConf%202022%20science%3A%20Writing%20and%20organizing%20literature%20notes%20for%20scientific%20writing)


<!-- End of emacsconf-publish-after-page -->