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-WEBVTT
-
-00:00:00.320 --> 00:00:03.280
-um so hi I'm joe corneli
-
-00:00:03.280 --> 00:00:05.920
-uh this is work I did with ray puzio and
-
-00:00:05.920 --> 00:00:06.879
-cameron smith
-
-00:00:06.879 --> 00:00:10.559
-um and they're the main protagonists in
-
-00:00:10.559 --> 00:00:11.599
-this story they
-
-00:00:11.599 --> 00:00:14.960
-are uh researchers who've been working
-
-00:00:14.960 --> 00:00:17.840
-on theoretical biology um so in a
-
-00:00:17.840 --> 00:00:20.160
-typical project they may use manxima
-
-00:00:20.160 --> 00:00:23.760
-and julia their work for biology physics
-
-00:00:23.760 --> 00:00:24.800
-and computer science
-
-00:00:24.800 --> 00:00:27.199
-computer science and the latest work in
-
-00:00:27.199 --> 00:00:29.439
-progress is on branching processes for
-
-00:00:29.439 --> 00:00:30.800
-cancer modeling so
-
-00:00:30.800 --> 00:00:34.719
-how can um Emacs possibly help
-
-00:00:34.719 --> 00:00:37.360
-let's let's have a look uh moving code
-
-00:00:37.360 --> 00:00:38.399
-and data between these different
-
-00:00:38.399 --> 00:00:39.680
-programs by hand is
-
-00:00:39.680 --> 00:00:42.000
-annoying on separate workflows for
-
-00:00:42.000 --> 00:00:43.200
-writing up notes and preparing
-
-00:00:43.200 --> 00:00:44.399
-publications
-
-00:00:44.399 --> 00:00:46.000
-is perhaps even more annoying all of
-
-00:00:46.000 --> 00:00:48.640
-it's time consuming and error-prone
-
-00:00:48.640 --> 00:00:52.000
-um so what about maybe using jupiter
-
-00:00:52.000 --> 00:00:53.760
-uh we found something called script of
-
-00:00:53.760 --> 00:00:55.199
-scripts and it solves some of those
-
-00:00:55.199 --> 00:00:58.399
-problems because you can use
-
-00:00:58.399 --> 00:01:01.120
-maximum and julia together but we were
-
-00:01:01.120 --> 00:01:02.640
-quite happy to explore emacs based
-
-00:01:02.640 --> 00:01:05.199
-solutions being emax enthusiasts and we
-
-00:01:05.199 --> 00:01:05.840
-even
-
-00:01:05.840 --> 00:01:07.760
-got cameron to be enthusiastic about
-
-00:01:07.760 --> 00:01:09.200
-doing emacs so that
-
-00:01:09.200 --> 00:01:11.600
-went nice so just here's a little
-
-00:01:11.600 --> 00:01:12.400
-feature grid
-
-00:01:12.400 --> 00:01:15.360
-of emacs org versus just sort of your
-
-00:01:15.360 --> 00:01:16.400
-generic
-
-00:01:16.400 --> 00:01:19.040
-um tools that are in a different more
-
-00:01:19.040 --> 00:01:20.960
-general ecosystem so as you can see it's
-
-00:01:20.960 --> 00:01:21.520
-quite
-
-00:01:21.520 --> 00:01:23.360
-feature complete you've got your maximo
-
-00:01:23.360 --> 00:01:25.520
-mode julia mode you can use both of them
-
-00:01:25.520 --> 00:01:27.119
-inside of org mode
-
-00:01:27.119 --> 00:01:28.720
-you can present things with word tree
-
-00:01:28.720 --> 00:01:30.240
-slide you can set up a
-
-00:01:30.240 --> 00:01:33.280
-wiki inside of orgrome this is one I
-
-00:01:33.280 --> 00:01:33.680
-found
-
-00:01:33.680 --> 00:01:35.759
-rather recently you can even use
-
-00:01:35.759 --> 00:01:37.759
-compatibly with orgrome something called
-
-00:01:37.759 --> 00:01:38.799
-log seek
-
-00:01:38.799 --> 00:01:41.520
-which is in the browser um so that's
-
-00:01:41.520 --> 00:01:42.159
-nice
-
-00:01:42.159 --> 00:01:44.320
-um you can do real-time collaborative
-
-00:01:44.320 --> 00:01:45.840
-editing um
-
-00:01:45.840 --> 00:01:47.840
-either in a kind of pairing style or in
-
-00:01:47.840 --> 00:01:49.280
-a more etherpad style
-
-00:01:49.280 --> 00:01:51.520
-obviously you can manage your references
-
-00:01:51.520 --> 00:01:54.159
-you can typeset whatever you want um you
-
-00:01:54.159 --> 00:01:55.759
-can publish work in progress on a blog
-
-00:01:55.759 --> 00:01:57.439
-and the fern is another one of these
-
-00:01:57.439 --> 00:01:58.159
-external
-
-00:01:58.159 --> 00:02:00.560
-org mode tools it's not actually any mac
-
-00:02:00.560 --> 00:02:01.360
-but works with
-
-00:02:01.360 --> 00:02:03.680
-org mode stuff and you know so we're
-
-00:02:03.680 --> 00:02:04.399
-good to go
-
-00:02:04.399 --> 00:02:06.640
-uh with all of that so what does that
-
-00:02:06.640 --> 00:02:08.000
-look like well here's
-
-00:02:08.000 --> 00:02:09.679
-a little example from before they were
-
-00:02:09.679 --> 00:02:11.599
-doing um
-
-00:02:11.599 --> 00:02:12.800
-before we started really thinking
-
-00:02:12.800 --> 00:02:14.560
-seriously about this stuff so this is
-
-00:02:14.560 --> 00:02:15.599
-just maxima
-
-00:02:15.599 --> 00:02:17.440
-well maximo doesn't have a long running
-
-00:02:17.440 --> 00:02:19.280
-process by default if you've ever used
-
-00:02:19.280 --> 00:02:20.160
-python
-
-00:02:20.160 --> 00:02:22.480
-uh you have something called sessions uh
-
-00:02:22.480 --> 00:02:23.920
-they don't have that for maxim at least
-
-00:02:23.920 --> 00:02:24.959
-not by default
-
-00:02:24.959 --> 00:02:27.599
-um so how what was the workaround
-
-00:02:27.599 --> 00:02:29.360
-there's this thing called uh
-
-00:02:29.360 --> 00:02:32.480
-solve for you here and um
-
-00:02:32.480 --> 00:02:34.879
-that shows up down below again in these
-
-00:02:34.879 --> 00:02:36.319
-angle brackets which you've seen maybe
-
-00:02:36.319 --> 00:02:37.360
-in someone else's talk
-
-00:02:37.360 --> 00:02:40.480
-uh which means go to the previous uh
-
-00:02:40.480 --> 00:02:41.920
-thing that was named soul for you
-
-00:02:41.920 --> 00:02:43.920
-and do that all over again so they do
-
-00:02:43.920 --> 00:02:45.280
-that over again
-
-00:02:45.280 --> 00:02:47.440
-and here's the little maxima code for
-
-00:02:47.440 --> 00:02:49.519
-defining you saw so you've now defined
-
-00:02:49.519 --> 00:02:50.560
-you saw
-
-00:02:50.560 --> 00:02:51.920
-and then you can use it in the next
-
-00:02:51.920 --> 00:02:54.000
-expression you get out a nice juicy
-
-00:02:54.000 --> 00:02:56.560
-zero at the end but it's a little bit a
-
-00:02:56.560 --> 00:02:57.200
-little bit
-
-00:02:57.200 --> 00:02:58.959
-like cartridge in a pear tree to have to
-
-00:02:58.959 --> 00:03:00.640
-redefine everything every time
-
-00:03:00.640 --> 00:03:02.560
-so this is clearly at the level of work
-
-00:03:02.560 --> 00:03:04.159
-around um maybe just
-
-00:03:04.159 --> 00:03:06.879
-one more time going looking through that
-
-00:03:06.879 --> 00:03:07.920
-um
-
-00:03:07.920 --> 00:03:11.599
-that stuff um
-
-00:03:11.599 --> 00:03:13.760
-sorry so uh looking through that stuff
-
-00:03:13.760 --> 00:03:15.280
-this is we're going to need something
-
-00:03:15.280 --> 00:03:17.200
-like that probably for stitching
-
-00:03:17.200 --> 00:03:19.599
-maxima and julie julia together so it's
-
-00:03:19.599 --> 00:03:20.319
-good to
-
-00:03:20.319 --> 00:03:21.680
-look a little bit about how that might
-
-00:03:21.680 --> 00:03:23.920
-work so first of all you can cache
-
-00:03:23.920 --> 00:03:25.680
-results so if you wanted to save the
-
-00:03:25.680 --> 00:03:26.480
-date
-
-00:03:26.480 --> 00:03:28.480
-out of block one at a certain time and
-
-00:03:28.480 --> 00:03:29.920
-then use
-
-00:03:29.920 --> 00:03:32.239
-use it again later so at the time when I
-
-00:03:32.239 --> 00:03:33.280
-ran this code
-
-00:03:33.280 --> 00:03:34.640
-you can see I've got two slightly
-
-00:03:34.640 --> 00:03:36.720
-different time stamps down below one's
-
-00:03:36.720 --> 00:03:38.560
-the cached result and the other was the
-
-00:03:38.560 --> 00:03:40.319
-result of reevaluating
-
-00:03:40.319 --> 00:03:42.640
-the block so you can move things around
-
-00:03:42.640 --> 00:03:43.760
-um and that's
-
-00:03:43.760 --> 00:03:46.000
-that's going to be useful but you know
-
-00:03:46.000 --> 00:03:47.280
-that's not really the main problem the
-
-00:03:47.280 --> 00:03:48.080
-main problem is
-
-00:03:48.080 --> 00:03:50.799
-making maxima long running so kind of
-
-00:03:50.799 --> 00:03:51.440
-the
-
-00:03:51.440 --> 00:03:53.920
-core of this talk is a new observant
-
-00:03:53.920 --> 00:03:56.400
-facility which is a general purpose
-
-00:03:56.400 --> 00:03:59.280
-way to do that kind of thing which
-
-00:03:59.280 --> 00:04:00.560
-involves a very simple
-
-00:04:00.560 --> 00:04:04.239
-change to obcor uh so we'll give a quick
-
-00:04:04.239 --> 00:04:05.360
-overview of that and show
-
-00:04:05.360 --> 00:04:08.480
-an example um so here's the example
-
-00:04:08.480 --> 00:04:11.760
-um a very simple sort of silly example
-
-00:04:11.760 --> 00:04:13.040
-uh what does it mean to have a long
-
-00:04:13.040 --> 00:04:14.640
-running process here I've set this
-
-00:04:14.640 --> 00:04:15.920
-display2d
-
-00:04:15.920 --> 00:04:18.560
-to be false um which just means that
-
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-things are going to come
-
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-come across in 1d and then I ask it to
-
-00:04:22.320 --> 00:04:23.040
-expand
-
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-uh something and I get latex by default
-
-00:04:25.199 --> 00:04:27.280
-so so that's what it means is I've sent
-
-00:04:27.280 --> 00:04:28.639
-something in and it's going to come
-
-00:04:28.639 --> 00:04:30.240
-across in one view which is great
-
-00:04:30.240 --> 00:04:32.080
-um maybe you'll also notice that there's
-
-00:04:32.080 --> 00:04:34.560
-no semicolon if you're a maxima fan
-
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-um and things are coming across as tech
-
-00:04:36.720 --> 00:04:38.400
-so those were some little bonus features
-
-00:04:38.400 --> 00:04:40.320
-and I'll show you how that works later
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-so
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-um the change to obcor is as follows uh
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-um we uh actually this should say uh
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-instead of stream here it should say um
-
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-servant
-
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-sorry uh we tried an experimental
-
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-version what's called stream so now it's
-
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-called servant but all it does is it
-
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-overrides uh or babel execute laying for
-
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-arbitrary laying
-
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-if you have um a servant
-
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-in your in your params so that's the
-
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-change that hasn't been
-
-00:05:09.759 --> 00:05:11.919
-pushed out or sent as a patch to anybody
-
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-but it's a pretty minor change
-
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-um here's an overview without the code
-
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-of just a high level overview of
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-observant.el so
-
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-it stores information about these
-
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-processes in a hash table
-
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-it can do pre-processing and
-
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-post-processing
-
-00:05:27.600 --> 00:05:29.759
-um it does all these things it stores
-
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-the output
-
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-I mentioned here that in principle we
-
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-could store lots of output and have a
-
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-kind of browsable
-
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-history although we don't do that
-
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-presently um but that's what observant
-
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-does is it does what you might expect
-
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-and here's the
-
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-here's the maxima kind of um
-
-00:05:45.440 --> 00:05:48.160
-on-ramp uh to get maxima brought in so
-
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-you have to obviously have a maximum
-
-00:05:49.600 --> 00:05:51.360
-process you can call
-
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-um put hash uh this is the preprocessing
-
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-thing I mentioned adding in some tech um
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-and adding in
-
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-uh or deleting rather a substring and
-
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-here here is why you delete the
-
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-substring
-
-00:06:03.759 --> 00:06:06.960
-is because um maxima thinks it's a good
-
-00:06:06.960 --> 00:06:08.240
-idea to tell you false
-
-00:06:08.240 --> 00:06:10.080
-once you once you run check on things
-
-00:06:10.080 --> 00:06:11.759
-you've got to delete that back out to
-
-00:06:11.759 --> 00:06:13.680
-get something kind of coherent out of it
-
-00:06:13.680 --> 00:06:16.960
-but so this is how to set up maximal um
-
-00:06:16.960 --> 00:06:19.280
-that's enough really of the demo is not
-
-00:06:19.280 --> 00:06:20.000
-really a demos for
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-show and tell but uh this is an
-
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-experience report I wanted to talk about
-
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-the experience of doing this
-
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-so some some negatives like we tried to
-
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-get emacs jupiter working
-
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-prior to prior to working on the um
-
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-observant and we couldn't get it doing
-
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-everything we wanted despite a bit of
-
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-heavy lifting and debugging and stuff so
-
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-that's not not finished that was a bit
-
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-difficult
-
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-um on the other hand working on
-
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-observing was fun and pretty lightweight
-
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-and easy
-
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-um we got some experience co-editing
-
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-things with these real-time tools
-
-00:06:52.400 --> 00:06:54.479
-obviously the stack is somewhat work in
-
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-progress um
-
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-so I just wanted to give a shout out to
-
-00:06:58.000 --> 00:07:00.800
-crdt which was really fun
-
-00:07:00.800 --> 00:07:03.919
-and champion was making bug fiction
-
-00:07:03.919 --> 00:07:07.039
-bug fixes for that as we go similarly
-
-00:07:07.039 --> 00:07:08.960
-for fern and log seek the maintainers
-
-00:07:08.960 --> 00:07:10.160
-were really responsive
-
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-um and so that was nice we did try to
-
-00:07:12.960 --> 00:07:14.560
-get emacs running in the browser
-
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-thinking it would be really nice for
-
-00:07:15.840 --> 00:07:16.880
-people who
-
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-um didn't want to install it to get a
-
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-chance to just try it
-
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-uh but actually browsers capture things
-
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-like uh control n
-
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-and so that's that was a bit annoying
-
-00:07:27.120 --> 00:07:28.479
-but we did get lots of great feedback
-
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-and interaction with people including
-
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-around this conference so thank you
-
-00:07:31.599 --> 00:07:33.759
-to those who we've had discussions with
-
-00:07:33.759 --> 00:07:35.599
-um
-
-00:07:35.599 --> 00:07:37.680
-so future work okay so maybe you
-
-00:07:37.680 --> 00:07:38.639
-remember I didn't
-
-00:07:38.639 --> 00:07:41.039
-give a talk a few years back on arcana
-
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-so what what
-
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-might this have to do with org mode and
-
-00:07:44.479 --> 00:07:45.919
-that's always the question one asks
-
-00:07:45.919 --> 00:07:47.039
-about arcata
-
-00:07:47.039 --> 00:07:48.720
-well so arcana one of the things it does
-
-00:07:48.720 --> 00:07:50.319
-is transclusions and so that could be
-
-00:07:50.319 --> 00:07:51.680
-actually very helpful
-
-00:07:51.680 --> 00:07:54.000
-in connection with this combined notes
-
-00:07:54.000 --> 00:07:55.520
-and write-up workflow so you might have
-
-00:07:55.520 --> 00:07:56.479
-a
-
-00:07:56.479 --> 00:07:58.400
-forward mode uh and some of these
-
-00:07:58.400 --> 00:08:00.800
-results we got back as raw results
-
-00:08:00.800 --> 00:08:03.199
-could go right into your write up in a
-
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-kind of
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-convenient way at a level above um
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-transparently a level above the notebook
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-00:08:09.039 --> 00:08:11.280
-so you'd have the notebook alongside the
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-write-up in that case
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-which is a sort of variation on the
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-literate programming
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-workflow this is speculative who knows
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-the other thought is
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-it just relates to the idea of network
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-00:08:22.080 --> 00:08:23.520
-programming so we can imagine these
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-networks of
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-computational nodes maybe sitting inside
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-of orgrome calling each other
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-um and you would want to maintain some
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-kind of model of that
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-process and a sort of general question
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-is how do we have a remote control for
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-long-running processes you could do that
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-in lisp or closure but
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-maybe we could have something a little
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-bit like that here
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-um so conclusions what have we actually
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-00:08:45.839 --> 00:08:48.080
-addressed well uh we addressed uh
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-accessing any long-running process with
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-a simple or mode interface
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-obviously we're not the only people to
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-00:08:52.959 --> 00:08:54.880
-think about notebooks but we think that
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-00:08:54.880 --> 00:08:56.880
-emacs has some advantages
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-related to reproducible research and
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-interdisciplinary collaboration so let's
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-00:09:01.120 --> 00:09:01.680
-just
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-say that we think something is
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-00:09:03.120 --> 00:09:04.880
-reproducible if it's actually teachable
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-00:09:04.880 --> 00:09:07.200
-to someone new and they can do it
-
-00:09:07.200 --> 00:09:09.279
-org mode seems very useful for that many
-
-00:09:09.279 --> 00:09:11.680
-of the other talks have touched on this
-
-00:09:11.680 --> 00:09:14.399
-interdisciplinary collaboration is great
-
-00:09:14.399 --> 00:09:16.000
-this was an interdisciplinary
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-collaboration on some level but
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-00:09:17.839 --> 00:09:19.680
-what about you know future work for
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-00:09:19.680 --> 00:09:21.600
-bringing in scenario planners simulation
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-scientists
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-and local farmers and building something
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-00:09:24.480 --> 00:09:25.519
-that they can all
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-00:09:25.519 --> 00:09:27.200
-use that's more than the sum of the
-
-00:09:27.200 --> 00:09:29.200
-parts so a little
-
-00:09:29.200 --> 00:09:30.720
-future work for everybody else here so
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-00:09:30.720 --> 00:09:32.160
-we think science should be widely
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-teachable
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-shareable semi-automated
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-00:09:34.560 --> 00:09:36.720
-transdisciplinary and real time
-
-00:09:36.720 --> 00:09:40.399
-like EmacsConf so you can get in touch
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-00:09:40.399 --> 00:09:43.279
-uh via these methods and the code which
-
-00:09:43.279 --> 00:09:44.560
-is very much early stage work in
-
-00:09:44.560 --> 00:09:45.200
-progress
-
-00:09:45.200 --> 00:09:46.640
-as this was meant to be an experience
-
-00:09:46.640 --> 00:09:48.800
-report not a it's all done here it is
-
-00:09:48.800 --> 00:09:49.920
-polished report
-
-00:09:49.920 --> 00:09:51.680
-um it's also online if you'd like to
-
-00:09:51.680 --> 00:09:53.360
-have a look so that's the end of the
-
-00:09:53.360 --> 00:09:54.560
-talk and I don't know if there's time
-
-00:09:54.560 --> 00:09:55.279
-for questions
-
-00:09:55.279 --> 00:09:57.440
-or not but um I'm at your disposal now
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-00:09:57.440 --> 00:10:00.240
-thank you you are now unmuted
-
-00:10:00.240 --> 00:10:04.079
-um many thanks for the tough job
-
-00:10:04.079 --> 00:10:07.120
-uh let's see we have about I think four
-
-00:10:07.120 --> 00:10:08.880
-minutes four questions
-
-00:10:08.880 --> 00:10:10.880
-um and we have a couple of questions on
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-00:10:10.880 --> 00:10:12.320
-the pad would you like to read them
-
-00:10:12.320 --> 00:10:14.240
-yourself or should I read them to you
-
-00:10:14.240 --> 00:10:16.560
-uh just for sake of easy management why
-
-00:10:16.560 --> 00:10:18.079
-don't you read them out if that's okay
-
-00:10:18.079 --> 00:10:21.279
-yeah sure uh so they ask have you looked
-
-00:10:21.279 --> 00:10:22.240
-into trying
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-00:10:22.240 --> 00:10:25.440
-sage math I've long uh long wanted
-
-00:10:25.440 --> 00:10:33.760
-nothing org files
-
-00:10:33.760 --> 00:10:36.959
-right and I and I wrote the answer that
-
-00:10:36.959 --> 00:10:39.279
-we should be possible because one can
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-00:10:39.279 --> 00:10:44.839
-call it from a command
-
-00:10:44.839 --> 00:10:46.399
-okay
-
-00:10:46.399 --> 00:10:48.640
-and I see there's another sagemath
-
-00:10:48.640 --> 00:10:50.079
-question that you seem to have answered
-
-00:10:50.079 --> 00:10:52.100
-as well so I guess I won't repeat that
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-00:10:52.100 --> 00:10:54.880
-[Music]
-
-00:10:54.880 --> 00:10:56.959
-there's let's not forget about embedded
-
-00:10:56.959 --> 00:11:00.640
-calc in emacs
-
-00:11:00.640 --> 00:11:03.680
-so so the first demos actually were with
-
-00:11:03.680 --> 00:11:05.040
-calc so that's that's
-
-00:11:05.040 --> 00:11:06.640
-useful uh although I think it was a
-
-00:11:06.640 --> 00:11:07.839
-different kind of a different command
-
-00:11:07.839 --> 00:11:08.240
-line
-
-00:11:08.240 --> 00:11:11.839
-well that was the next calc yeah
-
-00:11:11.839 --> 00:11:13.839
-so sure there is there is calc so that
-
-00:11:13.839 --> 00:11:15.680
-would be calculus and
-
-00:11:15.680 --> 00:11:19.120
-calc is already in org mode yeah
-
-00:11:19.120 --> 00:11:25.680
-yeah yeah
-
-00:11:25.680 --> 00:11:39.760
-um still looking for questions
-
-00:11:39.760 --> 00:11:41.760
-okay I think that's about it I don't see
-
-00:11:41.760 --> 00:11:44.320
-any questions on the ether pad
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-00:11:44.320 --> 00:11:47.440
-and let's see
-
-00:11:47.440 --> 00:11:53.040
-anything on irc
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-00:11:53.040 --> 00:11:55.760
-um nothing but phrases and everyone
-
-00:11:55.760 --> 00:11:56.720
-thanking you
-
-00:11:56.720 --> 00:11:59.120
-thank you all right you're welcome
-
-00:11:59.120 --> 00:12:00.240
-thanks a lot uh
-
-00:12:00.240 --> 00:12:02.880
-we'll see you guys around then cheers
-
-00:12:02.880 --> 00:12:06.800
-and see you around