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+WEBVTT
+
+
+00:00:00.820 --> 00:01:43.599
+Introduction
+
+00:01:43.600 --> 00:04:00.919
+Capture
+
+00:04:00.920 --> 00:05:03.478
+Organizing
+
+00:05:03.479 --> 00:07:55.479
+Ebib
+
+00:07:55.480 --> 00:09:36.178
+Filters
+
+00:09:36.179 --> 00:12:50.539
+Dependent databases
+
+00:12:50.540 --> 00:15:02.439
+Reading lists
+
+00:15:02.440 --> 00:18:05.639
+Special org-roam-node-find
+
+00:18:05.640 --> 00:19:21.819
+Annotations
+
+00:19:21.820 --> 00:20:14.000
+Wrapping up
diff --git a/2025/captions/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main.vtt b/2025/captions/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main.vtt
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+WEBVTT captioned by vidianos
+
+NOTE Introduction
+
+00:00:00.820 --> 00:00:03.079
+So, hello everyone, welcome to EmacsConf.
+
+00:00:03.080 --> 00:00:06.519
+My name is Vidianos, and I'm a PhD student in KU Leuven,
+
+00:00:06.520 --> 00:00:08.279
+and today I'm going to be showing you
+
+00:00:08.280 --> 00:00:12.679
+how I managed to use Emacs as a reference manager,
+
+00:00:12.680 --> 00:00:17.219
+replacing what was for me Zotero,
+
+00:00:17.220 --> 00:00:24.439
+to a fully fledged approach inside Emacs.
+
+00:00:24.440 --> 00:00:26.639
+So, what is my typical reference workflow?
+
+00:00:26.640 --> 00:00:28.479
+First I need to find literature,
+
+00:00:28.480 --> 00:00:30.439
+then I need to collect and organize it,
+
+00:00:30.440 --> 00:00:32.599
+which I originally did with Zotero,
+
+00:00:32.600 --> 00:00:36.611
+but now with Emacs centered tools
+
+00:00:36.612 --> 00:00:39.879
+such as zotra and ebib.
+
+00:00:39.880 --> 00:00:41.279
+Then I create a reading list.
+
+00:00:41.280 --> 00:00:43.439
+This is a new addition to my workflow
+
+00:00:43.440 --> 00:00:47.679
+I started doing after moving this approach to Emacs
+
+00:00:47.680 --> 00:00:50.119
+because now everything is well integrated.
+
+00:00:50.120 --> 00:00:53.839
+I have made a very nice reading list implementation
+
+00:00:53.840 --> 00:00:57.759
+inside org-roam which I am going to be showing today.
+
+00:00:57.760 --> 00:01:01.199
+Then obviously I need to read the literature, take notes,
+
+00:01:01.200 --> 00:01:04.239
+organize the notes, and ensure I am actually learning
+
+00:01:04.240 --> 00:01:06.539
+from what I am reading. This is then done through packages
+
+00:01:06.540 --> 00:01:09.159
+such as org-noter and org-roam
+
+00:01:09.160 --> 00:01:11.359
+and is not going to be the focus of this talk.
+
+00:01:11.360 --> 00:01:14.239
+I already gave a talk about this part of my workflow,
+
+00:01:14.240 --> 00:01:17.959
+which I've been doing for many years now.
+
+00:01:17.960 --> 00:01:20.439
+You can find that
+
+00:01:20.440 --> 00:01:23.239
+or you can find many other people's approaches
+
+00:01:23.240 --> 00:01:25.999
+to reading literature and taking notes
+
+00:01:26.000 --> 00:01:31.039
+as it is quite a popular topic in the Emacs community.
+
+00:01:31.040 --> 00:01:32.759
+Lastly, I will have a short section
+
+00:01:32.760 --> 00:01:37.039
+about how I ensure that I can recall the knowledge
+
+00:01:37.040 --> 00:01:39.679
+from this literature very easily
+
+00:01:39.680 --> 00:01:43.599
+through this reference management system.
+
+NOTE Capture
+
+00:01:43.600 --> 00:01:48.199
+So, how can we capture an article in Emacs?
+
+00:01:48.200 --> 00:01:52.099
+One of the most commonly known packages is doi-utils
+
+00:01:52.100 --> 00:01:58.879
+where doi-utils has a lot of useful things to do
+
+00:01:58.880 --> 00:02:03.519
+and one of them is to capture a paper,
+
+00:02:03.520 --> 00:02:06.459
+but you need a DOI, and for me, that is a bit inconvenient,
+
+00:02:06.460 --> 00:02:08.879
+because what I want to do is that
+
+00:02:08.880 --> 00:02:11.999
+I have a URL here of a paper,
+
+00:02:12.000 --> 00:02:16.519
+I want to just copy this URL, not copy the DOI,
+
+00:02:16.520 --> 00:02:23.199
+and be able to save it immediately to my bib file.
+
+00:02:23.200 --> 00:02:24.311
+And that can now be done
+
+00:02:24.312 --> 00:02:27.719
+through this function zotra-add-entry.
+
+00:02:27.720 --> 00:02:28.679
+And as you can see here,
+
+00:02:28.680 --> 00:02:31.079
+there is also a zotra-download-attachment
+
+00:02:31.080 --> 00:02:34.159
+that sometimes works, but not always.
+
+00:02:34.160 --> 00:02:35.879
+I don't personally recommend it.
+
+00:02:35.880 --> 00:02:39.599
+But the problem is that due to articles being
+
+00:02:39.600 --> 00:02:42.639
+locked behind paywalls in many cases,
+
+00:02:42.640 --> 00:02:45.639
+downloading attachments doesn't work
+
+00:02:45.640 --> 00:02:47.479
+through Emacs. Sometimes it doesn't work
+
+00:02:47.480 --> 00:02:51.119
+through Zotero. Sometimes you just need to go to the browser,
+
+00:02:51.120 --> 00:02:54.259
+say download PDF, and that's the only solution
+
+00:02:54.260 --> 00:02:58.399
+that will properly work.
+
+00:02:58.400 --> 00:03:01.519
+So how do I then add this to the paper?
+
+00:03:01.520 --> 00:03:04.711
+I need to find this paper that is here
+
+00:03:04.712 --> 00:03:05.879
+through ivy-bibtex.
+
+00:03:05.880 --> 00:03:10.239
+This is the bib file manager I use.
+
+00:03:10.240 --> 00:03:11.759
+There is also others like citar.
+
+00:03:11.760 --> 00:03:15.559
+I think citar has much better coding and integration
+
+00:03:15.560 --> 00:03:18.159
+with other packages, but I haven't really bothered
+
+00:03:18.160 --> 00:03:19.639
+to move from ivy-bibtex
+
+00:03:19.640 --> 00:03:24.439
+because it does basically everything I want perfectly.
+
+00:03:24.440 --> 00:03:28.279
+So I go here, say add pdf to library.
+
+00:03:28.280 --> 00:03:31.719
+I find where I saved it,
+
+00:03:31.720 --> 00:03:35.399
+and it will suggest to automatically name it something
+
+00:03:35.400 --> 00:03:37.445
+which is in full integration
+
+00:03:37.446 --> 00:03:40.919
+with the rest of my Emacs packages,
+
+00:03:40.920 --> 00:03:43.839
+and all the literature management stuff
+
+00:03:43.840 --> 00:03:46.799
+knows to find it with this exact name.
+
+00:03:46.800 --> 00:03:49.045
+So it iss saved and now
+
+00:03:49.046 --> 00:03:53.319
+when I try to create a file from this,
+
+00:03:53.320 --> 00:03:55.199
+which I will show later,
+
+00:03:55.200 --> 00:04:00.919
+you will see that the file will already appear there.
+
+NOTE Organizing
+
+00:04:00.920 --> 00:04:06.519
+So now let's go to organizing.
+
+00:04:06.520 --> 00:04:09.119
+Organizing in Zotero is typically done through a
+
+00:04:09.120 --> 00:04:10.519
+hierarchical folder structure.
+
+00:04:10.520 --> 00:04:14.999
+This is very familiar to most people and generally works,
+
+00:04:15.000 --> 00:04:19.519
+but being someone that takes notes using the Zettelkasten method,
+
+00:04:19.520 --> 00:04:24.319
+which has a fully flat hierarchy, nothing goes in folders,
+
+00:04:24.320 --> 00:04:27.959
+everything is in the same folder,
+
+00:04:27.960 --> 00:04:31.959
+and you find everything because it's connected to other things.
+
+00:04:31.960 --> 00:04:34.839
+We have some basic indexes,
+
+00:04:34.840 --> 00:04:37.799
+from where you can jump to different points.
+
+00:04:37.800 --> 00:04:41.359
+I love this structure, so I also wanted to include it
+
+00:04:41.360 --> 00:04:42.919
+in my bibliography management,
+
+00:04:42.920 --> 00:04:45.579
+because with folders you have problems like,
+
+00:04:45.580 --> 00:04:48.359
+this article can go in that folder, can go in that folder,
+
+00:04:48.360 --> 00:04:51.079
+can go in that folder. Where do I actually put it?
+
+00:04:51.080 --> 00:04:54.439
+Do I put copies of it in different folders?
+
+00:04:54.440 --> 00:04:59.279
+It's just confusing and not really practical in my opinion.
+
+00:04:59.280 --> 00:05:03.478
+So I tried to do this approach inside Emacs.
+
+NOTE Ebib
+
+00:05:03.479 --> 00:05:08.239
+And how? With Ebib.
+
+00:05:08.240 --> 00:05:11.719
+Ebib is an amazing software built inside Emacs.
+
+00:05:11.720 --> 00:05:15.679
+It's a reference manager and it works absolutely amazing
+
+00:05:15.680 --> 00:05:18.199
+if you configure it to your liking.
+
+00:05:18.200 --> 00:05:21.119
+So let's open ebib first.
+
+00:05:21.120 --> 00:05:23.519
+This is the interface you will see when opening.
+
+00:05:23.520 --> 00:05:27.159
+Actually, by default you will not see anything,
+
+00:05:27.160 --> 00:05:30.799
+but I have open three bib files.
+
+00:05:30.800 --> 00:05:36.119
+These are opened by default on boot of ebib for me.
+
+00:05:36.120 --> 00:05:39.839
+These are my three main master bib files.
+
+00:05:39.840 --> 00:05:41.719
+This is the Zotero master bib file,
+
+00:05:41.720 --> 00:05:44.599
+which only Zotero can touch. If I change it,
+
+00:05:44.600 --> 00:05:47.959
+it will be overwritten. This is my new master bib,
+
+00:05:47.960 --> 00:05:53.759
+where I save all the files that I have now started using
+
+00:05:53.760 --> 00:05:55.599
+after switching to this approach.
+
+00:05:55.600 --> 00:05:59.119
+And then this is the master bib file
+
+00:05:59.120 --> 00:06:02.519
+for literature related to my PhD
+
+00:06:02.520 --> 00:06:07.479
+and things that I have already read.
+
+00:06:07.480 --> 00:06:09.759
+It's a very convenient interface.
+
+00:06:09.760 --> 00:06:14.140
+There is also search. There is one searching tool,
+
+00:06:14.141 --> 00:06:16.519
+the jump to entry, ebib-jump-to-entry,
+
+00:06:16.520 --> 00:06:23.039
+which searches through all open bib files for the title.
+
+00:06:23.040 --> 00:06:29.319
+So for example, I can search for membrane fabrication,
+
+00:06:29.320 --> 00:06:35.839
+because that's something I am currently doing,
+
+00:06:35.840 --> 00:06:41.919
+and go to this. There is another searching tool,
+
+00:06:41.920 --> 00:06:45.639
+the ebib-search, which searches through the database
+
+00:06:45.640 --> 00:06:48.359
+that you're on right now
+
+00:06:48.360 --> 00:06:50.399
+and it does a full text search,
+
+00:06:50.400 --> 00:06:53.459
+not only in the titles, but everywhere.
+
+00:06:53.460 --> 00:06:57.039
+So, for example, I see that in this paper
+
+00:06:57.040 --> 00:07:04.759
+if I go to the abstract and search for the word FTIR,
+
+00:07:04.760 --> 00:07:06.879
+which is a chemical analysis,
+
+00:07:06.880 --> 00:07:09.879
+it will tell me that it's here.
+
+00:07:09.880 --> 00:07:16.539
+Can it find it anywhere else? It cannot. That's okay.
+
+00:07:16.540 --> 00:07:18.111
+Let's search for something
+
+00:07:18.112 --> 00:07:21.679
+that we'll be able to find more easily,
+
+00:07:21.680 --> 00:07:24.799
+like, for example, membrane crystallization
+
+00:07:24.800 --> 00:07:27.539
+which is a main focus of my PhD.
+
+00:07:27.540 --> 00:07:30.319
+Then it will be able to find it many times,
+
+00:07:30.320 --> 00:07:35.159
+many, many times.
+
+00:07:35.160 --> 00:07:40.299
+I can also search on the next database
+
+00:07:40.300 --> 00:07:49.479
+or on this database and see where is everything that I want.
+
+00:07:49.480 --> 00:07:55.479
+So this is different searching tools which are very useful.
+
+NOTE Filters
+
+00:07:55.480 --> 00:08:01.700
+Then there's also another tool, that is, filters.
+
+00:08:01.701 --> 00:08:06.199
+So I can filter on any field.
+
+00:08:06.200 --> 00:08:09.739
+Like, for example, let's say on any field,
+
+00:08:09.740 --> 00:08:13.159
+and let's say I'm looking now again
+
+00:08:13.160 --> 00:08:16.279
+for membrane crystallization.
+
+00:08:16.280 --> 00:08:19.879
+This will now filter to all entries.
+
+00:08:19.880 --> 00:08:22.119
+You can see right now there's 18 entries here
+
+00:08:22.120 --> 00:08:28.019
+that mention these two words together in any field.
+
+00:08:28.020 --> 00:08:31.759
+Sometimes this is easier, because this is permanent.
+
+00:08:31.760 --> 00:08:33.699
+It's not like the search that we find one
+
+00:08:33.700 --> 00:08:35.218
+and then if you move, you've lost it,
+
+00:08:35.219 --> 00:08:37.885
+and you need to find it again.
+
+00:08:37.886 --> 00:08:39.679
+This is permanent until I say,
+
+00:08:39.680 --> 00:08:41.799
+okay, cancel the filter.
+
+00:08:41.800 --> 00:08:43.479
+I mostly work with filters,
+
+00:08:43.480 --> 00:08:47.059
+I think they're the most convenient.
+
+00:08:47.060 --> 00:08:49.679
+Then there's also the ebib-list-recent
+
+00:08:49.680 --> 00:08:51.479
+which is another very useful command.
+
+00:08:51.480 --> 00:08:53.359
+It asks you for a number of days
+
+00:08:53.360 --> 00:08:56.559
+and it will show you the files that were added
+
+00:08:56.560 --> 00:08:58.479
+in the most recent.
+
+00:08:58.480 --> 00:09:02.159
+So for example, show me the literature files
+
+00:09:02.160 --> 00:09:05.839
+that were added to this bib file in the last month.
+
+00:09:05.840 --> 00:09:09.799
+I will see five files in this case,
+
+00:09:09.800 --> 00:09:12.699
+because in this bib file, I have mostly entries
+
+00:09:12.700 --> 00:09:15.239
+that I have read, these are the files
+
+00:09:15.240 --> 00:09:18.959
+I have most recently read and added here.
+
+00:09:18.960 --> 00:09:21.599
+While if I go for example here and say that,
+
+00:09:21.600 --> 00:09:25.799
+these are files that maybe I haven't read yet,
+
+00:09:25.800 --> 00:09:31.099
+but I was planning to read. So this is something useful.
+
+00:09:31.100 --> 00:09:32.999
+Although for things I'm planning to read,
+
+00:09:33.000 --> 00:09:34.439
+I mostly use the reading list
+
+00:09:34.440 --> 00:09:36.178
+that I'm going to show next.
+
+NOTE Dependent databases
+
+00:09:36.179 --> 00:09:37.399
+But before that,
+
+00:09:37.400 --> 00:09:41.759
+a few more neat things that you can do in Ebib.
+
+00:09:41.760 --> 00:09:45.019
+So I have a list of dependent databases.
+
+00:09:45.020 --> 00:09:48.819
+For ease, I have already opened them here.
+
+00:09:48.820 --> 00:09:52.599
+These, as you can see, have two brackets here,
+
+00:09:52.600 --> 00:09:59.439
+indicating that they're dependent on phd_literature_1.bib,
+
+00:09:59.440 --> 00:10:06.378
+and these, in my case, act as the sort of index file,
+
+00:10:06.379 --> 00:10:10.911
+where I am tagging things based on the structure
+
+00:10:10.912 --> 00:10:14.651
+that I wanted to have for the organization.
+
+00:10:14.652 --> 00:10:16.478
+So all the organization is flat,
+
+00:10:16.479 --> 00:10:20.145
+all the literature is in phd_literature_1,
+
+00:10:20.146 --> 00:10:23.419
+however, I have this file
+
+00:10:23.420 --> 00:10:25.839
+that has 14 entries.
+
+00:10:25.840 --> 00:10:32.899
+I have another file here that has 20 entries.
+
+00:10:32.900 --> 00:10:35.719
+And these are smaller indexes
+
+00:10:35.720 --> 00:10:38.519
+where I can find things easier,
+
+00:10:38.520 --> 00:10:41.159
+but things are not limited to one of these.
+
+00:10:41.160 --> 00:10:45.599
+Things can be in all of these, or probably not all of these,
+
+00:10:45.600 --> 00:10:50.479
+but can be in three or four of these very easily.
+
+00:10:50.480 --> 00:10:55.219
+And how you add things is that I go here,
+
+00:10:55.220 --> 00:11:00.079
+and I say not r, it's... M for the dependent databases,
+
+00:11:00.080 --> 00:11:02.079
+and I add entry, and it will tell me
+
+00:11:02.080 --> 00:11:03.159
+"Where do you want to add this?"
+
+00:11:03.160 --> 00:11:05.159
+So when I read a new paper,
+
+00:11:05.160 --> 00:11:09.839
+I can say okay, this is related to these three tags,
+
+00:11:09.840 --> 00:11:11.239
+and this is sort of like, again,
+
+00:11:11.240 --> 00:11:13.185
+it's tagging it and it's putting it
+
+00:11:13.186 --> 00:11:15.059
+there, there, and there.
+
+00:11:15.060 --> 00:11:17.599
+And then this creates a flat structure
+
+00:11:17.600 --> 00:11:21.619
+that however has a great organization,
+
+00:11:21.620 --> 00:11:23.799
+similar to how Zettelkasten works
+
+00:11:23.800 --> 00:11:27.879
+and I really like working with something like this,
+
+00:11:27.880 --> 00:11:33.719
+with dependent databases.
+
+00:11:33.720 --> 00:11:36.539
+Another feature that I really like,
+
+00:11:36.540 --> 00:11:41.919
+another feature that exists by default... But if I tag,
+
+00:11:41.920 --> 00:11:45.279
+this tagging is done through "m",
+
+00:11:45.280 --> 00:11:49.019
+and then I can tag different files here,
+
+00:11:49.020 --> 00:11:52.159
+and this is to do different actions with these together,
+
+00:11:52.160 --> 00:11:53.585
+such as, for example,
+
+00:11:53.586 --> 00:11:55.585
+copy them to a different file,
+
+00:11:55.586 --> 00:11:59.459
+with "x" I can export the entries somewhere else,
+
+00:11:59.460 --> 00:12:00.685
+there are many things that you can do
+
+00:12:00.686 --> 00:12:01.439
+when you mark them.
+
+00:12:01.440 --> 00:12:05.319
+By the way, one of them is this function,
+
+00:12:05.320 --> 00:12:08.939
+which sees everything that I have marked
+
+00:12:08.940 --> 00:12:14.785
+and shows me an org-roam-node-find entry
+
+00:12:14.786 --> 00:12:18.052
+that is filtered to just these files.
+
+00:12:18.053 --> 00:12:20.885
+I can select one and it will take me
+
+00:12:20.886 --> 00:12:24.399
+to my notes on this specific paper.
+
+00:12:24.400 --> 00:12:25.719
+I find this very useful,
+
+00:12:25.720 --> 00:12:27.159
+because I can be looking for something
+
+00:12:27.160 --> 00:12:30.018
+and I can say, okay I remember,
+
+00:12:30.019 --> 00:12:31.399
+or I did some filtering,
+
+00:12:31.400 --> 00:12:34.099
+and I know it's in one of these files
+
+00:12:34.100 --> 00:12:37.239
+and now I want to see my in-depth notes on each one
+
+00:12:37.240 --> 00:12:41.079
+to remember where exactly I found it.
+
+00:12:41.080 --> 00:12:43.419
+So I find this kind of filtering,
+
+00:12:43.420 --> 00:12:50.539
+this org-roam related filtering, to be also very effective.
+
+NOTE Reading lists
+
+00:12:50.540 --> 00:12:54.079
+So now let's finally move to reading list.
+
+00:12:54.080 --> 00:12:55.399
+The reading list in ebib
+
+00:12:55.400 --> 00:13:00.259
+reminds me a lot of the philosophy that Emacs uses.
+
+00:13:00.260 --> 00:13:05.119
+By default, it is extremely bare bones, not very usable,
+
+00:13:05.120 --> 00:13:10.719
+but it is so customizable, to where you can do
+
+00:13:10.720 --> 00:13:13.019
+anything that you can imagine through it
+
+00:13:13.020 --> 00:13:16.479
+because the limit truly is your imagination.
+
+00:13:16.480 --> 00:13:21.039
+It's how much you can code into this
+
+00:13:21.040 --> 00:13:22.519
+that actually makes sense
+
+00:13:22.520 --> 00:13:25.479
+and you can actually imagine it working.
+
+00:13:25.480 --> 00:13:31.699
+Besides that, you can do anything really.
+
+00:13:31.700 --> 00:13:36.799
+So we can open ebib and try to find this paper
+
+00:13:36.800 --> 00:13:42.699
+that I just added here.
+
+00:13:42.700 --> 00:13:48.679
+Then we can create a reading list entry from it.
+
+00:13:48.680 --> 00:13:51.999
+Here, my reading list prompts me
+
+00:13:52.000 --> 00:13:53.418
+for a priority for this.
+
+00:13:53.419 --> 00:13:57.239
+How urgent it is for me to read this.
+
+00:13:57.240 --> 00:14:02.219
+It adds a TO-READ, which is a todo entry,
+
+00:14:02.220 --> 00:14:04.479
+which helps with organizing my reading list,
+
+00:14:04.480 --> 00:14:08.679
+because as you may also be able to see, this has an ID,
+
+00:14:08.680 --> 00:14:11.579
+because this is an org-roam node,
+
+00:14:11.580 --> 00:14:16.839
+so the TO-READ allows me to organize it inside org-roam.
+
+00:14:16.840 --> 00:14:21.839
+It saves the citekey, the link to the paper,
+
+00:14:21.840 --> 00:14:25.979
+and also tags it with the parent file node
+
+00:14:25.980 --> 00:14:30.379
+because I don't like having orphan nodes in my Zettelkasten.
+
+00:14:30.380 --> 00:14:33.839
+I like everything to be linked to at least one thing.
+
+00:14:33.840 --> 00:14:35.799
+So everything in the reading list
+
+00:14:35.800 --> 00:14:39.299
+is linked to the parent file.
+
+00:14:39.300 --> 00:14:47.519
+And now I can find this in the org-roam-node-find menu,
+
+00:14:47.520 --> 00:14:53.719
+here. However, that's not very interesting.
+
+00:14:53.720 --> 00:14:56.239
+In practice, my typical org-roam-node-find
+
+00:14:56.240 --> 00:14:59.759
+does not even include these reading list files
+
+00:14:59.760 --> 00:15:02.439
+because I don't really care to have them there.
+
+NOTE Special org-roam-node-find
+
+00:15:02.440 --> 00:15:06.159
+I have a special org-roam-node-find
+
+00:15:06.160 --> 00:15:13.439
+that is designed to find these in particular.
+
+00:15:13.440 --> 00:15:16.459
+And here these have 22. These are the amount of files
+
+00:15:16.460 --> 00:15:21.679
+that are currently in my reading list.
+
+00:15:21.680 --> 00:15:29.899
+So for example, let's try and press here.
+
+00:15:29.900 --> 00:15:33.479
+And magically, this prompts me to select a capture template,
+
+00:15:33.480 --> 00:15:39.119
+because what it's doing is that I selected this,
+
+00:15:39.120 --> 00:15:42.119
+and because of the citekey, it knows
+
+00:15:42.120 --> 00:15:46.539
+that it wants to create a new node for that.
+
+00:15:46.540 --> 00:15:47.959
+So I select the capture template.
+
+00:15:47.960 --> 00:15:56.099
+It knows that it wants to create this new node for this.
+
+00:15:56.100 --> 00:16:01.359
+And now, if I for a second close the reading list,
+
+00:16:01.360 --> 00:16:07.119
+now I can already go ahead and take notes on this.
+
+00:16:07.120 --> 00:16:09.759
+This is org-noter, in particular,
+
+00:16:09.760 --> 00:16:11.599
+and it makes it all very easy
+
+00:16:11.600 --> 00:16:15.719
+because it's all integrated in one place.
+
+00:16:15.720 --> 00:16:22.539
+If I then close this and open a new Emacs,
+
+00:16:22.540 --> 00:16:27.939
+we have this, and the reading list allows me to very quickly
+
+00:16:27.940 --> 00:16:32.539
+go from this being reading this item to initializing it.
+
+00:16:32.540 --> 00:16:35.039
+Another thing that is very useful is that
+
+00:16:35.040 --> 00:16:38.739
+everything is sorted by priority.
+
+00:16:38.740 --> 00:16:41.359
+So I need to increase the font size again
+
+00:16:41.360 --> 00:16:48.899
+because I closed the previous Emacs.
+
+00:16:48.900 --> 00:16:52.319
+So here, I can select what is high priority,
+
+00:16:52.320 --> 00:16:56.399
+what is low priority. I can also change the priority
+
+00:16:56.400 --> 00:16:58.799
+without needing to be in this file.
+
+00:16:58.800 --> 00:17:05.479
+Let's leave this file. I can say, okay, I decided
+
+00:17:05.480 --> 00:17:08.639
+that this file is priority B. It needs to be A,
+
+00:17:08.640 --> 00:17:11.899
+which is more urgent.
+
+00:17:11.900 --> 00:17:16.079
+In my system, there's five different priority levels.
+
+00:17:16.080 --> 00:17:17.999
+You can get away with less
+
+00:17:18.000 --> 00:17:20.959
+but I like to have the very much low ones
+
+00:17:20.960 --> 00:17:22.999
+as this is not urgent at all
+
+00:17:23.000 --> 00:17:27.159
+but I want to keep it somewhere. A is very urgent
+
+00:17:27.160 --> 00:17:31.779
+and B is urgent but just below A.
+
+00:17:31.780 --> 00:17:34.619
+And then the C in the middle is just
+
+00:17:34.620 --> 00:17:35.999
+I will eventually read this
+
+00:17:36.000 --> 00:17:41.919
+but not something I want to focus my attention on right now.
+
+00:17:41.920 --> 00:17:45.439
+So this is mostly about reading list.
+
+00:17:45.440 --> 00:17:46.639
+I can also show, for example,
+
+00:17:46.640 --> 00:17:50.679
+I have this if I finalize something,
+
+00:17:50.680 --> 00:17:56.799
+if I read it. For example, I created a note for this new thing.
+
+00:17:56.800 --> 00:17:59.079
+Let's say I finished reading it.
+
+00:17:59.080 --> 00:18:02.179
+I want to remove from my reading list.
+
+00:18:02.180 --> 00:18:05.639
+It's also just one command and it's done.
+
+NOTE Annotations
+
+00:18:05.640 --> 00:18:08.739
+If we now return to the presentation,
+
+00:18:08.740 --> 00:18:11.699
+the last thing I want to show is annotations.
+
+00:18:11.700 --> 00:18:17.119
+So for annotations, it's the idea that sometimes
+
+00:18:17.120 --> 00:18:23.139
+you just need to find something in Ebib quickly.
+
+00:18:23.140 --> 00:18:26.679
+So I'm here and I'm looking for something.
+
+00:18:26.680 --> 00:18:30.999
+I said I'm here and I'm looking for something.
+
+00:18:31.000 --> 00:18:35.199
+And as you can see, there's the annote file everywhere,
+
+00:18:35.200 --> 00:18:40.839
+the annote entry, which is a very very small description
+
+00:18:40.840 --> 00:18:43.799
+of things that I want to remember for this paper.
+
+00:18:43.800 --> 00:18:48.039
+So I can be scrolling here or scrolling
+
+00:18:48.040 --> 00:18:51.811
+in one of the smaller files
+
+00:18:51.812 --> 00:18:56.859
+and saying this was in this subsection,
+
+00:18:56.860 --> 00:18:59.519
+and which paper was it, and I can scroll,
+
+00:18:59.520 --> 00:19:01.711
+read all these annotes.
+
+00:19:01.712 --> 00:19:04.919
+Each annote takes like 15 seconds to read,
+
+00:19:04.920 --> 00:19:07.359
+and really decide, okay,
+
+00:19:07.360 --> 00:19:09.799
+it was this paper that I wanted, good.
+
+00:19:09.800 --> 00:19:21.819
+Now I can open the note for it, go there, and it's very easy.
+
+NOTE Wrapping up
+
+00:19:21.820 --> 00:19:25.719
+So I think that's all. I would like to thank you for your time.
+
+00:19:25.720 --> 00:19:29.319
+I would love to see your questions either in IRC,
+
+00:19:29.320 --> 00:19:32.199
+I will be, maybe I've already answered
+
+00:19:32.200 --> 00:19:35.039
+some of your questions there in the Etherpad,
+
+00:19:35.040 --> 00:19:37.599
+or right now, we're going to the live Q&A
+
+00:19:37.600 --> 00:19:42.159
+where I'd love to interact with everyone and have a discussion.
+
+00:19:42.160 --> 00:19:44.479
+However, if you don't have any questions right now,
+
+00:19:44.480 --> 00:19:48.559
+but you have a question later on, feel free to send me an email.
+
+00:19:48.560 --> 00:19:51.739
+My mail is also on the site.
+
+00:19:51.740 --> 00:19:54.599
+And if you're curious how all this "magic" worked,
+
+00:19:54.600 --> 00:20:00.839
+feel free to go to my Github and see the ebib section
+
+00:20:00.840 --> 00:20:04.039
+here that will also be linked in the doc page,
+
+00:20:04.040 --> 00:20:06.279
+where you can see all the configuration
+
+00:20:06.280 --> 00:20:10.919
+that I have done in Ebib for everything to work.
+
+00:20:10.920 --> 00:20:14.000
+Thank you again and have a wonderful EmacsConf!
diff --git a/2025/info/reference-after.md b/2025/info/reference-after.md
index fe2189b6..00456b05 100644
--- a/2025/info/reference-after.md
+++ b/2025/info/reference-after.md
@@ -1,7 +1,358 @@
 <!-- Automatically generated by emacsconf-publish-after-page -->
 
 
-Questions or comments? Please e-mail [vidianosgiannitsis@gmail.com](mailto:vidianosgiannitsis@gmail.com?subject=Comment%20for%20EmacsConf%202023%20reference%3A%20Emacs%20as%20a%20fully-fledged%20reference%20manager)
+<div class="transcript transcript-mainVideo"><a name="reference-mainVideo-transcript"></a><h1>Transcript</h1>
+
+
+<div class="transcript-heading">[[!template new="1" text="""Introduction""" start="00:00:00.820" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""So, hello everyone, welcome to EmacsConf.""" start="00:00:00.820" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""My name is Vidianos, and I'm a PhD student in KU Leuven,""" start="00:00:03.080" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and today I'm going to be showing you""" start="00:00:06.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""how I managed to use Emacs as a reference manager,""" start="00:00:08.280" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""replacing what was for me Zotero,""" start="00:00:12.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""to a fully fledged approach inside Emacs.""" start="00:00:17.220" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So, what is my typical reference workflow?""" start="00:00:24.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""First I need to find literature,""" start="00:00:26.640" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""then I need to collect and organize it,""" start="00:00:28.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which I originally did with Zotero,""" start="00:00:30.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but now with Emacs centered tools""" start="00:00:32.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""such as zotra and ebib.""" start="00:00:36.612" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Then I create a reading list.""" start="00:00:39.880" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""This is a new addition to my workflow""" start="00:00:41.280" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I started doing after moving this approach to Emacs""" start="00:00:43.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because now everything is well integrated.""" start="00:00:47.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I have made a very nice reading list implementation""" start="00:00:50.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""inside org-roam which I am going to be showing today.""" start="00:00:53.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Then obviously I need to read the literature, take notes,""" start="00:00:57.760" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""organize the notes, and ensure I am actually learning""" start="00:01:01.200" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""from what I am reading. This is then done through packages""" start="00:01:04.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""such as org-noter and org-roam""" start="00:01:06.540" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and is not going to be the focus of this talk.""" start="00:01:09.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I already gave a talk about this part of my workflow,""" start="00:01:11.360" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which I've been doing for many years now.""" start="00:01:14.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""You can find that""" start="00:01:17.960" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""or you can find many other people's approaches""" start="00:01:20.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""to reading literature and taking notes""" start="00:01:23.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""as it is quite a popular topic in the Emacs community.""" start="00:01:26.000" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Lastly, I will have a short section""" start="00:01:31.040" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""about how I ensure that I can recall the knowledge""" start="00:01:32.760" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""from this literature very easily""" start="00:01:37.040" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""through this reference management system.""" start="00:01:39.680" video="mainVideo-reference" id="subtitle"]]
+
+<div class="transcript-heading">[[!template new="1" text="""Capture""" start="00:01:43.600" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""So, how can we capture an article in Emacs?""" start="00:01:43.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""One of the most commonly known packages is doi-utils""" start="00:01:48.200" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""where doi-utils has a lot of useful things to do""" start="00:01:52.100" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and one of them is to capture a paper,""" start="00:01:58.880" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but you need a DOI, and for me, that is a bit inconvenient,""" start="00:02:03.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because what I want to do is that""" start="00:02:06.460" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I have a URL here of a paper,""" start="00:02:08.880" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I want to just copy this URL, not copy the DOI,""" start="00:02:12.000" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and be able to save it immediately to my bib file.""" start="00:02:16.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And that can now be done""" start="00:02:23.200" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""through this function zotra-add-entry.""" start="00:02:24.312" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And as you can see here,""" start="00:02:27.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""there is also a zotra-download-attachment""" start="00:02:28.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that sometimes works, but not always.""" start="00:02:31.080" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I don't personally recommend it.""" start="00:02:34.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""But the problem is that due to articles being""" start="00:02:35.880" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""locked behind paywalls in many cases,""" start="00:02:39.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""downloading attachments doesn't work""" start="00:02:42.640" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""through Emacs. Sometimes it doesn't work""" start="00:02:45.640" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""through Zotero. Sometimes you just need to go to the browser,""" start="00:02:47.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""say download PDF, and that's the only solution""" start="00:02:51.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that will properly work.""" start="00:02:54.260" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So how do I then add this to the paper?""" start="00:02:58.400" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I need to find this paper that is here""" start="00:03:01.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""through ivy-bibtex.""" start="00:03:04.712" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""This is the bib file manager I use.""" start="00:03:05.880" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""There is also others like citar.""" start="00:03:10.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I think citar has much better coding and integration""" start="00:03:11.760" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""with other packages, but I haven't really bothered""" start="00:03:15.560" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""to move from ivy-bibtex""" start="00:03:18.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because it does basically everything I want perfectly.""" start="00:03:19.640" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So I go here, say add pdf to library.""" start="00:03:24.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I find where I saved it,""" start="00:03:28.280" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and it will suggest to automatically name it something""" start="00:03:31.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which is in full integration""" start="00:03:35.400" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""with the rest of my Emacs packages,""" start="00:03:37.446" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and all the literature management stuff""" start="00:03:40.920" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""knows to find it with this exact name.""" start="00:03:43.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So it iss saved and now""" start="00:03:46.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""when I try to create a file from this,""" start="00:03:49.046" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which I will show later,""" start="00:03:53.320" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""you will see that the file will already appear there.""" start="00:03:55.200" video="mainVideo-reference" id="subtitle"]]
+
+<div class="transcript-heading">[[!template new="1" text="""Organizing""" start="00:04:00.920" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""So now let's go to organizing.""" start="00:04:00.920" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Organizing in Zotero is typically done through a""" start="00:04:06.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""hierarchical folder structure.""" start="00:04:09.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""This is very familiar to most people and generally works,""" start="00:04:10.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but being someone that takes notes using the Zettelkasten method,""" start="00:04:15.000" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which has a fully flat hierarchy, nothing goes in folders,""" start="00:04:19.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""everything is in the same folder,""" start="00:04:24.320" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and you find everything because it's connected to other things.""" start="00:04:27.960" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""We have some basic indexes,""" start="00:04:31.960" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""from where you can jump to different points.""" start="00:04:34.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I love this structure, so I also wanted to include it""" start="00:04:37.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""in my bibliography management,""" start="00:04:41.360" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because with folders you have problems like,""" start="00:04:42.920" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""this article can go in that folder, can go in that folder,""" start="00:04:45.580" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""can go in that folder. Where do I actually put it?""" start="00:04:48.360" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Do I put copies of it in different folders?""" start="00:04:51.080" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It's just confusing and not really practical in my opinion.""" start="00:04:54.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So I tried to do this approach inside Emacs.""" start="00:04:59.280" video="mainVideo-reference" id="subtitle"]]
+
+<div class="transcript-heading">[[!template new="1" text="""Ebib""" start="00:05:03.479" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""And how? With Ebib.""" start="00:05:03.479" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Ebib is an amazing software built inside Emacs.""" start="00:05:08.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It's a reference manager and it works absolutely amazing""" start="00:05:11.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""if you configure it to your liking.""" start="00:05:15.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So let's open ebib first.""" start="00:05:18.200" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""This is the interface you will see when opening.""" start="00:05:21.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Actually, by default you will not see anything,""" start="00:05:23.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but I have open three bib files.""" start="00:05:27.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""These are opened by default on boot of ebib for me.""" start="00:05:30.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""These are my three main master bib files.""" start="00:05:36.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""This is the Zotero master bib file,""" start="00:05:39.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which only Zotero can touch. If I change it,""" start="00:05:41.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""it will be overwritten. This is my new master bib,""" start="00:05:44.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""where I save all the files that I have now started using""" start="00:05:47.960" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""after switching to this approach.""" start="00:05:53.760" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And then this is the master bib file""" start="00:05:55.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""for literature related to my PhD""" start="00:05:59.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and things that I have already read.""" start="00:06:02.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It's a very convenient interface.""" start="00:06:07.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""There is also search. There is one searching tool,""" start="00:06:09.760" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""the jump to entry, ebib-jump-to-entry,""" start="00:06:14.141" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which searches through all open bib files for the title.""" start="00:06:16.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So for example, I can search for membrane fabrication,""" start="00:06:23.040" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because that's something I am currently doing,""" start="00:06:29.320" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and go to this. There is another searching tool,""" start="00:06:35.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""the ebib-search, which searches through the database""" start="00:06:41.920" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that you're on right now""" start="00:06:45.640" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and it does a full text search,""" start="00:06:48.360" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""not only in the titles, but everywhere.""" start="00:06:50.400" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So, for example, I see that in this paper""" start="00:06:53.460" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""if I go to the abstract and search for the word FTIR,""" start="00:06:57.040" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which is a chemical analysis,""" start="00:07:04.760" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""it will tell me that it's here.""" start="00:07:06.880" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Can it find it anywhere else? It cannot. That's okay.""" start="00:07:09.880" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Let's search for something""" start="00:07:16.540" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that we'll be able to find more easily,""" start="00:07:18.112" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""like, for example, membrane crystallization""" start="00:07:21.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which is a main focus of my PhD.""" start="00:07:24.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Then it will be able to find it many times,""" start="00:07:27.540" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""many, many times.""" start="00:07:30.320" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I can also search on the next database""" start="00:07:35.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""or on this database and see where is everything that I want.""" start="00:07:40.300" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So this is different searching tools which are very useful.""" start="00:07:49.480" video="mainVideo-reference" id="subtitle"]]
+
+<div class="transcript-heading">[[!template new="1" text="""Filters""" start="00:07:55.480" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""Then there's also another tool, that is, filters.""" start="00:07:55.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So I can filter on any field.""" start="00:08:01.701" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Like, for example, let's say on any field,""" start="00:08:06.200" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and let's say I'm looking now again""" start="00:08:09.740" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""for membrane crystallization.""" start="00:08:13.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""This will now filter to all entries.""" start="00:08:16.280" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""You can see right now there's 18 entries here""" start="00:08:19.880" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that mention these two words together in any field.""" start="00:08:22.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Sometimes this is easier, because this is permanent.""" start="00:08:28.020" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It's not like the search that we find one""" start="00:08:31.760" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and then if you move, you've lost it,""" start="00:08:33.700" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and you need to find it again.""" start="00:08:35.219" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""This is permanent until I say,""" start="00:08:37.886" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""okay, cancel the filter.""" start="00:08:39.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I mostly work with filters,""" start="00:08:41.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I think they're the most convenient.""" start="00:08:43.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Then there's also the ebib-list-recent""" start="00:08:47.060" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which is another very useful command.""" start="00:08:49.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It asks you for a number of days""" start="00:08:51.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and it will show you the files that were added""" start="00:08:53.360" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""in the most recent.""" start="00:08:56.560" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So for example, show me the literature files""" start="00:08:58.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that were added to this bib file in the last month.""" start="00:09:02.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I will see five files in this case,""" start="00:09:05.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because in this bib file, I have mostly entries""" start="00:09:09.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that I have read, these are the files""" start="00:09:12.700" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I have most recently read and added here.""" start="00:09:15.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""While if I go for example here and say that,""" start="00:09:18.960" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""these are files that maybe I haven't read yet,""" start="00:09:21.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but I was planning to read. So this is something useful.""" start="00:09:25.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Although for things I'm planning to read,""" start="00:09:31.100" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I mostly use the reading list""" start="00:09:33.000" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that I'm going to show next.""" start="00:09:34.440" video="mainVideo-reference" id="subtitle"]]
+
+<div class="transcript-heading">[[!template new="1" text="""Dependent databases""" start="00:09:36.179" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""But before that,""" start="00:09:36.179" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""a few more neat things that you can do in Ebib.""" start="00:09:37.400" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So I have a list of dependent databases.""" start="00:09:41.760" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""For ease, I have already opened them here.""" start="00:09:45.020" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""These, as you can see, have two brackets here,""" start="00:09:48.820" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""indicating that they're dependent on phd_literature_1.bib,""" start="00:09:52.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and these, in my case, act as the sort of index file,""" start="00:09:59.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""where I am tagging things based on the structure""" start="00:10:06.379" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that I wanted to have for the organization.""" start="00:10:10.912" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So all the organization is flat,""" start="00:10:14.652" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""all the literature is in phd_literature_1,""" start="00:10:16.479" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""however, I have this file""" start="00:10:20.146" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that has 14 entries.""" start="00:10:23.420" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I have another file here that has 20 entries.""" start="00:10:25.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And these are smaller indexes""" start="00:10:32.900" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""where I can find things easier,""" start="00:10:35.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but things are not limited to one of these.""" start="00:10:38.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Things can be in all of these, or probably not all of these,""" start="00:10:41.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but can be in three or four of these very easily.""" start="00:10:45.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And how you add things is that I go here,""" start="00:10:50.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and I say not r, it's... M for the dependent databases,""" start="00:10:55.220" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and I add entry, and it will tell me""" start="00:11:00.080" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""&quot;Where do you want to add this?&quot;""" start="00:11:02.080" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So when I read a new paper,""" start="00:11:03.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I can say okay, this is related to these three tags,""" start="00:11:05.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and this is sort of like, again,""" start="00:11:09.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""it's tagging it and it's putting it""" start="00:11:11.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""there, there, and there.""" start="00:11:13.186" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And then this creates a flat structure""" start="00:11:15.060" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that however has a great organization,""" start="00:11:17.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""similar to how Zettelkasten works""" start="00:11:21.620" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and I really like working with something like this,""" start="00:11:23.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""with dependent databases.""" start="00:11:27.880" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Another feature that I really like,""" start="00:11:33.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""another feature that exists by default... But if I tag,""" start="00:11:36.540" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""this tagging is done through &quot;m&quot;,""" start="00:11:41.920" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and then I can tag different files here,""" start="00:11:45.280" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and this is to do different actions with these together,""" start="00:11:49.020" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""such as, for example,""" start="00:11:52.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""copy them to a different file,""" start="00:11:53.586" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""with &quot;x&quot; I can export the entries somewhere else,""" start="00:11:55.586" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""there are many things that you can do""" start="00:11:59.460" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""when you mark them.""" start="00:12:00.686" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""By the way, one of them is this function,""" start="00:12:01.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which sees everything that I have marked""" start="00:12:05.320" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and shows me an org-roam-node-find entry""" start="00:12:08.940" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that is filtered to just these files.""" start="00:12:14.786" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I can select one and it will take me""" start="00:12:18.053" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""to my notes on this specific paper.""" start="00:12:20.886" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I find this very useful,""" start="00:12:24.400" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because I can be looking for something""" start="00:12:25.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and I can say, okay I remember,""" start="00:12:27.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""or I did some filtering,""" start="00:12:30.019" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and I know it's in one of these files""" start="00:12:31.400" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and now I want to see my in-depth notes on each one""" start="00:12:34.100" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""to remember where exactly I found it.""" start="00:12:37.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So I find this kind of filtering,""" start="00:12:41.080" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""this org-roam related filtering, to be also very effective.""" start="00:12:43.420" video="mainVideo-reference" id="subtitle"]]
+
+<div class="transcript-heading">[[!template new="1" text="""Reading lists""" start="00:12:50.540" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""So now let's finally move to reading list.""" start="00:12:50.540" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""The reading list in ebib""" start="00:12:54.080" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""reminds me a lot of the philosophy that Emacs uses.""" start="00:12:55.400" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""By default, it is extremely bare bones, not very usable,""" start="00:13:00.260" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but it is so customizable, to where you can do""" start="00:13:05.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""anything that you can imagine through it""" start="00:13:10.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because the limit truly is your imagination.""" start="00:13:13.020" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It's how much you can code into this""" start="00:13:16.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that actually makes sense""" start="00:13:21.040" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and you can actually imagine it working.""" start="00:13:22.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Besides that, you can do anything really.""" start="00:13:25.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So we can open ebib and try to find this paper""" start="00:13:31.700" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that I just added here.""" start="00:13:36.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Then we can create a reading list entry from it.""" start="00:13:42.700" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Here, my reading list prompts me""" start="00:13:48.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""for a priority for this.""" start="00:13:52.000" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""How urgent it is for me to read this.""" start="00:13:53.419" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It adds a TO-READ, which is a todo entry,""" start="00:13:57.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which helps with organizing my reading list,""" start="00:14:02.220" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because as you may also be able to see, this has an ID,""" start="00:14:04.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because this is an org-roam node,""" start="00:14:08.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""so the TO-READ allows me to organize it inside org-roam.""" start="00:14:11.580" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It saves the citekey, the link to the paper,""" start="00:14:16.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and also tags it with the parent file node""" start="00:14:21.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because I don't like having orphan nodes in my Zettelkasten.""" start="00:14:25.980" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I like everything to be linked to at least one thing.""" start="00:14:30.380" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So everything in the reading list""" start="00:14:33.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""is linked to the parent file.""" start="00:14:35.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And now I can find this in the org-roam-node-find menu,""" start="00:14:39.300" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""here. However, that's not very interesting.""" start="00:14:47.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""In practice, my typical org-roam-node-find""" start="00:14:53.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""does not even include these reading list files""" start="00:14:56.240" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because I don't really care to have them there.""" start="00:14:59.760" video="mainVideo-reference" id="subtitle"]]
+
+<div class="transcript-heading">[[!template new="1" text="""Special org-roam-node-find""" start="00:15:02.440" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""I have a special org-roam-node-find""" start="00:15:02.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that is designed to find these in particular.""" start="00:15:06.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And here these have 22. These are the amount of files""" start="00:15:13.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that are currently in my reading list.""" start="00:15:16.460" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So for example, let's try and press here.""" start="00:15:21.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And magically, this prompts me to select a capture template,""" start="00:15:29.900" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because what it's doing is that I selected this,""" start="00:15:33.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and because of the citekey, it knows""" start="00:15:39.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that it wants to create a new node for that.""" start="00:15:42.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So I select the capture template.""" start="00:15:46.540" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It knows that it wants to create this new node for this.""" start="00:15:47.960" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And now, if I for a second close the reading list,""" start="00:15:56.100" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""now I can already go ahead and take notes on this.""" start="00:16:01.360" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""This is org-noter, in particular,""" start="00:16:07.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and it makes it all very easy""" start="00:16:09.760" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because it's all integrated in one place.""" start="00:16:11.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""If I then close this and open a new Emacs,""" start="00:16:15.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""we have this, and the reading list allows me to very quickly""" start="00:16:22.540" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""go from this being reading this item to initializing it.""" start="00:16:27.940" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Another thing that is very useful is that""" start="00:16:32.540" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""everything is sorted by priority.""" start="00:16:35.040" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So I need to increase the font size again""" start="00:16:38.740" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""because I closed the previous Emacs.""" start="00:16:41.360" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So here, I can select what is high priority,""" start="00:16:48.900" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""what is low priority. I can also change the priority""" start="00:16:52.320" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""without needing to be in this file.""" start="00:16:56.400" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Let's leave this file. I can say, okay, I decided""" start="00:16:58.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that this file is priority B. It needs to be A,""" start="00:17:05.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""which is more urgent.""" start="00:17:08.640" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""In my system, there's five different priority levels.""" start="00:17:11.900" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""You can get away with less""" start="00:17:16.080" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but I like to have the very much low ones""" start="00:17:18.000" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""as this is not urgent at all""" start="00:17:20.960" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but I want to keep it somewhere. A is very urgent""" start="00:17:23.000" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and B is urgent but just below A.""" start="00:17:27.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And then the C in the middle is just""" start="00:17:31.780" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I will eventually read this""" start="00:17:34.620" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but not something I want to focus my attention on right now.""" start="00:17:36.000" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So this is mostly about reading list.""" start="00:17:41.920" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I can also show, for example,""" start="00:17:45.440" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I have this if I finalize something,""" start="00:17:46.640" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""if I read it. For example, I created a note for this new thing.""" start="00:17:50.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Let's say I finished reading it.""" start="00:17:56.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I want to remove from my reading list.""" start="00:17:59.080" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""It's also just one command and it's done.""" start="00:18:02.180" video="mainVideo-reference" id="subtitle"]]
+
+<div class="transcript-heading">[[!template new="1" text="""Annotations""" start="00:18:05.640" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""If we now return to the presentation,""" start="00:18:05.640" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""the last thing I want to show is annotations.""" start="00:18:08.740" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So for annotations, it's the idea that sometimes""" start="00:18:11.700" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""you just need to find something in Ebib quickly.""" start="00:18:17.120" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So I'm here and I'm looking for something.""" start="00:18:23.140" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I said I'm here and I'm looking for something.""" start="00:18:26.680" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And as you can see, there's the annote file everywhere,""" start="00:18:31.000" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""the annote entry, which is a very very small description""" start="00:18:35.200" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""of things that I want to remember for this paper.""" start="00:18:40.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""So I can be scrolling here or scrolling""" start="00:18:43.800" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""in one of the smaller files""" start="00:18:48.040" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and saying this was in this subsection,""" start="00:18:51.812" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and which paper was it, and I can scroll,""" start="00:18:56.860" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""read all these annotes.""" start="00:18:59.520" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Each annote takes like 15 seconds to read,""" start="00:19:01.712" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""and really decide, okay,""" start="00:19:04.920" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""it was this paper that I wanted, good.""" start="00:19:07.360" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Now I can open the note for it, go there, and it's very easy.""" start="00:19:09.800" video="mainVideo-reference" id="subtitle"]]
+
+<div class="transcript-heading">[[!template new="1" text="""Wrapping up""" start="00:19:21.820" video="mainVideo-reference" id="subtitle"]]</div>[[!template text="""So I think that's all. I would like to thank you for your time.""" start="00:19:21.820" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I would love to see your questions either in IRC,""" start="00:19:25.720" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""I will be, maybe I've already answered""" start="00:19:29.320" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""some of your questions there in the Etherpad,""" start="00:19:32.200" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""or right now, we're going to the live Q&A""" start="00:19:35.040" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""where I'd love to interact with everyone and have a discussion.""" start="00:19:37.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""However, if you don't have any questions right now,""" start="00:19:42.160" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""but you have a question later on, feel free to send me an email.""" start="00:19:44.480" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""My mail is also on the site.""" start="00:19:48.560" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""And if you're curious how all this &quot;magic&quot; worked,""" start="00:19:51.740" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""feel free to go to my Github and see the ebib section""" start="00:19:54.600" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""here that will also be linked in the doc page,""" start="00:20:00.840" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""where you can see all the configuration""" start="00:20:04.040" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""that I have done in Ebib for everything to work.""" start="00:20:06.280" video="mainVideo-reference" id="subtitle"]]
+[[!template text="""Thank you again and have a wonderful EmacsConf!""" start="00:20:10.920" video="mainVideo-reference" id="subtitle"]]
+
+</div>Questions or comments? Please e-mail [vidianosgiannitsis@gmail.com](mailto:vidianosgiannitsis@gmail.com?subject=Comment%20for%20EmacsConf%202023%20reference%3A%20Emacs%20as%20a%20fully-fledged%20reference%20manager)
 
 
 <!-- End of emacsconf-publish-after-page -->
diff --git a/2025/info/reference-before.md b/2025/info/reference-before.md
index 6645f353..05733e27 100644
--- a/2025/info/reference-before.md
+++ b/2025/info/reference-before.md
@@ -8,12 +8,24 @@ The following image shows where the talk is in the schedule for Sat 2025-12-06.
 Format: 21-min talk			; Q&A: BigBlueButton conference room <https://media.emacsconf.org/2025/current/bbb-reference.html> Etherpad: <https://pad.emacsconf.org/2025-reference>  
 Etherpad: <https://pad.emacsconf.org/2025-reference>  
 Discuss on IRC: [#emacsconf-gen](https://chat.emacsconf.org/?join=emacsconf,emacsconf-gen)  
-Status: Quality check  
+Status: Now playing on the conference livestream  
 <div>Times in different time zones:</div><div class="times" start="2025-12-06T14:30:00Z" end="2025-12-06T14:55:00Z"><div class="conf-time">Saturday, Dec 6 2025, ~9:30 AM - 9:55 AM EST (US/Eastern)</div><div class="others"><div>which is the same as:</div>Saturday, Dec 6 2025, ~8:30 AM - 8:55 AM CST (US/Central)<br />Saturday, Dec 6 2025, ~7:30 AM - 7:55 AM MST (US/Mountain)<br />Saturday, Dec 6 2025, ~6:30 AM - 6:55 AM PST (US/Pacific)<br />Saturday, Dec 6 2025, ~2:30 PM - 2:55 PM UTC <br />Saturday, Dec 6 2025, ~3:30 PM - 3:55 PM CET (Europe/Paris)<br />Saturday, Dec 6 2025, ~4:30 PM - 4:55 PM EET (Europe/Athens)<br />Saturday, Dec 6 2025, ~8:00 PM - 8:25 PM IST (Asia/Kolkata)<br />Saturday, Dec 6 2025, ~10:30 PM - 10:55 PM +08 (Asia/Singapore)<br />Saturday, Dec 6 2025, ~11:30 PM - 11:55 PM JST (Asia/Tokyo)</div></div><div><strong><a href="/2025/watch/gen/">Find out how to watch and participate</a></strong></div>
 
 
 
 
+<div class="vid mainVideo"><video controls preload="none" id="mainVideo-reference"><source src="https://media.emacsconf.org/2025/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main.webm" />captions="""<track label="English" kind="captions" srclang="en" src="/2025/captions/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main.vtt" default />"""<track kind="chapters" label="Chapters" src="/2025/captions/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main--chapters.vtt" /><p><em>Your browser does not support the video tag. Please download the video instead.</em></p></video>[[!template id="chapters" vidid="mainVideo-reference" data="""
+00:00:00.820 Introduction
+01:43.600 Capture
+04:00.920 Organizing
+05:03.479 Ebib
+07:55.480 Filters
+09:36.179 Dependent databases
+12:50.540 Reading lists
+15:02.440 Special org-roam-node-find
+18:05.640 Annotations
+19:21.820 Wrapping up
 
+"""]]<div></div>Duration: 20:14 minutes<div class="files resources"><ul><li><a href="https://pad.emacsconf.org/2025-reference">Open Etherpad</a></li><li><a href="https://media.emacsconf.org/2025/current/bbb-reference.html">Open public Q&A</a></li><li><a href="https://media.emacsconf.org/2025/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--intro.vtt">Download --intro.vtt</a></li><li><a href="https://media.emacsconf.org/2025/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--intro.webm">Download --intro.webm</a></li><li><a href="https://media.emacsconf.org/2025/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main--chapters.vtt">Download --main--chapters.vtt</a></li><li><a href="https://media.emacsconf.org/2025/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main.opus">Download --main.opus (18MB)</a></li><li><a href="https://media.emacsconf.org/2025/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main.png">Download --main.png</a></li><li><a href="https://media.emacsconf.org/2025/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main.vtt">Download --main.vtt</a></li><li><a href="https://media.emacsconf.org/2025/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--main.webm">Download --main.webm (103MB)</a></li><li><a href="https://media.emacsconf.org/2025/emacsconf-2025-reference--emacs-as-a-fullyfledged-reference-manager--vidianos-giannitsis--script.org">Download --script.org</a></li><li><a href="https://youtu.be/XjhnY4WuQRQ">View on Youtube</a></li></ul></div></div>
 # Description
 <!-- End of emacsconf-publish-before-page -->
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