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In this talk, Vidianos Giannitsis shares how he uses Org Roam, org-noter, and zetteldesk.el to manage his literature notes and write articles. Afterwards, he will handle questions over BigBlueButton.
The following image shows where the talk is in the schedule for Sat 2022-12-03. Solid lines show talks with Q&A via BigBlueButton. Dashed lines show talks with Q&A via IRC or Etherpad.<div class="schedule-in-context schedule-svg-container" data-slug="science">
<svg width="800" height="150" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink"> <title> Schedule for Saturday</title> <rect width="800" height="150" x="0" y="0" fill="white"></rect> <text font-size="10" fill="black" y="12" x="3"> Saturday</text> <a href="/2022/talks/sat-open" title="Saturday opening remarks" data-slug="sat-open"> <title> 9:00- 9:05 Saturday opening remarks</title> <rect x="0" y="15" opacity="0.5" width="7" height="59" stroke="black" stroke-dasharray="" fill="peachpuff"></rect> <g transform="translate(5,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> sat-open</text></g></a> <a href="/2022/talks/journalism" title="Emacs journalism (or everything's a nail if you hit it with Emacs)" data-slug="journalism"> <title> 9:05- 9:25 Emacs journalism (or everything's a nail if you hit it with Emacs)</title> <rect x="7" y="15" opacity="0.5" width="31" height="59" stroke="black" stroke-dasharray="" fill="peachpuff"></rect> <g transform="translate(36,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> journalism</text></g></a> <a href="/2022/talks/school" title="Back to school with Emacs" data-slug="school"> <title> 9:45- 9:55 Back to school with Emacs</title> <rect x="70" y="15" opacity="0.5" width="15" height="59" stroke="black" stroke-dasharray="5,5,5" fill="peachpuff"></rect> <g transform="translate(83,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> school</text></g></a> <a href="/2022/talks/handwritten" title="How to incorporate handwritten notes into Emacs Orgmode" data-slug="handwritten"> <title> 10:05-10:15 How to incorporate handwritten notes into Emacs Orgmode</title> <rect x="101" y="15" opacity="0.5" width="15" height="59" stroke="black" stroke-dasharray="" fill="peachpuff"></rect> <g transform="translate(114,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> handwritten</text></g></a> <a href="/2022/talks/science" title="Writing and organizing literature notes for scientific writing" data-slug="science"> <title> 10:45-11:05 Writing and organizing literature notes for scientific writing</title> <rect stroke-width="3" x="164" y="15" opacity="0.8" width="31" height="59" stroke="black" stroke-dasharray="" fill="peachpuff"></rect> <g transform="translate(193,73)"> <text font-weight="bold" fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> science</text></g></a> <a href="/2022/talks/buddy" title="The Emacs Buddy initiative" data-slug="buddy"> <title> 11:25-11:35 The Emacs Buddy initiative</title> <rect x="227" y="15" opacity="0.5" width="15" height="59" stroke="black" stroke-dasharray="5,5,5" fill="peachpuff"></rect> <g transform="translate(240,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> buddy</text></g></a> <a href="/2022/talks/meetups" title="Attending and organizing Emacs meetups" data-slug="meetups"> <title> 1:00- 1:20 Attending and organizing Emacs meetups</title> <rect x="376" y="15" opacity="0.5" width="31" height="59" stroke="black" stroke-dasharray="" fill="peachpuff"></rect> <g transform="translate(405,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> meetups</text></g></a> <a href="/2022/talks/buttons" title="Linking personal info with Hyperbole implicit buttons" data-slug="buttons"> <title> 1:40- 1:55 Linking personal info with Hyperbole implicit buttons</title> <rect x="439" y="15" opacity="0.5" width="23" height="59" stroke="black" stroke-dasharray="" fill="peachpuff"></rect> <g transform="translate(460,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> buttons</text></g></a> <a href="/2022/talks/realestate" title="Real estate and Org table formulas" data-slug="realestate"> <title> 2:15- 2:40 Real estate and Org table formulas</title> <rect x="494" y="15" opacity="0.5" width="39" height="59" stroke="black" stroke-dasharray="5,5,5" fill="peachpuff"></rect> <g transform="translate(531,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> realestate</text></g></a> <a href="/2022/talks/health" title="Health data journaling and visualization with Org Mode and gnuplot" data-slug="health"> <title> 3:00- 3:25 Health data journaling and visualization with Org Mode and gnuplot</title> <rect x="564" y="15" opacity="0.5" width="39" height="59" stroke="black" stroke-dasharray="" fill="peachpuff"></rect> <g transform="translate(601,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> health</text></g></a> <a href="/2022/talks/jupyter" title="Edit live Jupyter notebook cells with Emacs" data-slug="jupyter"> <title> 3:45- 4:05 Edit live Jupyter notebook cells with Emacs</title> <rect x="635" y="15" opacity="0.5" width="31" height="59" stroke="black" stroke-dasharray="" fill="peachpuff"></rect> <g transform="translate(664,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> jupyter</text></g></a> <a href="/2022/talks/sat-close" title="Saturday closing remarks" data-slug="sat-close"> <title> 4:50- 4:55 Saturday closing remarks</title> <rect x="737" y="15" opacity="0.5" width="7" height="59" stroke="black" stroke-dasharray="" fill="peachpuff"></rect> <g transform="translate(742,73)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> sat-close</text></g></a> <a href="/2022/talks/treesitter" title="Tree-sitter beyond syntax highlighting" data-slug="treesitter"> <title> 10:00-10:15 Tree-sitter beyond syntax highlighting</title> <rect x="94" y="75" opacity="0.5" width="23" height="59" stroke="black" stroke-dasharray="5,5,5" fill="skyblue"></rect> <g transform="translate(115,133)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> treesitter</text></g></a> <a href="/2022/talks/lspbridge" title="lsp-bridge: a smooth-as-butter asynchronous LSP client" data-slug="lspbridge"> <title> 10:25-10:45 lsp-bridge: a smooth-as-butter asynchronous LSP client</title> <rect x="133" y="75" opacity="0.5" width="31" height="59" stroke="black" stroke-dasharray="5,5,5" fill="skyblue"></rect> <g transform="translate(162,133)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> lspbridge</text></g></a> <a href="/2022/talks/asmblox" title="asm-blox: a game based on WebAssembly that no one asked for" data-slug="asmblox"> <title> 10:55-11:15 asm-blox: a game based on WebAssembly that no one asked for</title> <rect x="180" y="75" opacity="0.5" width="31" height="59" stroke="black" stroke-dasharray="" fill="skyblue"></rect> <g transform="translate(209,133)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> asmblox</text></g></a> <a href="/2022/talks/wayland" title="Emacs should become a Wayland compositor" data-slug="wayland"> <title> 11:25-11:35 Emacs should become a Wayland compositor</title> <rect x="227" y="75" opacity="0.5" width="15" height="59" stroke="black" stroke-dasharray="" fill="skyblue"></rect> <g transform="translate(240,133)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> wayland</text></g></a> <a href="/2022/talks/sqlite" title="Using SQLite as a data source: a framework and an example" data-slug="sqlite"> <title> 1:00- 1:25 Using SQLite as a data source: a framework and an example</title> <rect x="376" y="75" opacity="0.5" width="39" height="59" stroke="black" stroke-dasharray="" fill="skyblue"></rect> <g transform="translate(413,133)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> sqlite</text></g></a> <a href="/2022/talks/mail" title="Revisiting the anatomy of Emacs mail user agents" data-slug="mail"> <title> 1:50- 2:30 Revisiting the anatomy of Emacs mail user agents</title> <rect x="454" y="75" opacity="0.5" width="62" height="59" stroke="black" stroke-dasharray="" fill="skyblue"></rect> <g transform="translate(514,133)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> mail</text></g></a> <a href="/2022/talks/maint" title="Maintaining the Maintainers: Attribution as an Economic Model for Open Source" data-slug="maint"> <title> 2:50- 3:10 Maintaining the Maintainers: Attribution as an Economic Model for Open Source</title> <rect x="549" y="75" opacity="0.5" width="31" height="59" stroke="black" stroke-dasharray="" fill="skyblue"></rect> <g transform="translate(578,133)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> maint</text></g></a> <a href="/2022/talks/eev" title="Bidirectional links with eev" data-slug="eev"> <title> 3:35- 3:40 Bidirectional links with eev</title> <rect x="619" y="75" opacity="0.5" width="7" height="59" stroke="black" stroke-dasharray="5,5,5" fill="skyblue"></rect> <g transform="translate(624,133)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> eev</text></g></a> <a href="/2022/talks/haskell" title="Haskell code exploration with Emacs" data-slug="haskell"> <title> 4:05- 4:35 Haskell code exploration with Emacs</title> <rect x="666" y="75" opacity="0.5" width="47" height="59" stroke="black" stroke-dasharray="" fill="skyblue"></rect> <g transform="translate(711,133)"> <text fill="black" x="0" y="0" font-size="10" transform="rotate(-90)"> haskell</text></g></a> <g transform="translate(0,15)"> <line stroke="darkgray" x1="0" y1="0" x2="0" y2="120"></line> <text fill="black" x="0" y="133" font-size="10" text-anchor="left"> 9 AM</text></g> <g transform="translate(94,15)"> <line stroke="darkgray" x1="0" y1="0" x2="0" y2="120"></line> <text fill="black" x="0" y="133" font-size="10" text-anchor="left"> 10 AM</text></g> <g transform="translate(188,15)"> <line stroke="darkgray" x1="0" y1="0" x2="0" y2="120"></line> <text fill="black" x="0" y="133" font-size="10" text-anchor="left"> 11 AM</text></g> <g transform="translate(282,15)"> <line stroke="darkgray" x1="0" y1="0" x2="0" y2="120"></line> <text fill="black" x="0" y="133" font-size="10" text-anchor="left"> 12 PM</text></g> <g transform="translate(376,15)"> <line stroke="darkgray" x1="0" y1="0" x2="0" y2="120"></line> <text fill="black" x="0" y="133" font-size="10" text-anchor="left"> 1 PM</text></g> <g transform="translate(470,15)"> <line stroke="darkgray" x1="0" y1="0" x2="0" y2="120"></line> <text fill="black" x="0" y="133" font-size="10" text-anchor="left"> 2 PM</text></g> <g transform="translate(564,15)"> <line stroke="darkgray" x1="0" y1="0" x2="0" y2="120"></line> <text fill="black" x="0" y="133" font-size="10" text-anchor="left"> 3 PM</text></g> <g transform="translate(658,15)"> <line stroke="darkgray" x1="0" y1="0" x2="0" y2="120"></line> <text fill="black" x="0" y="133" font-size="10" text-anchor="left"> 4 PM</text></g> <g transform="translate(752,15)"> <line stroke="darkgray" x1="0" y1="0" x2="0" y2="120"></line> <text fill="black" x="0" y="133" font-size="10" text-anchor="left"> 5 PM</text></g></svg>
</div>
[[!toc ]]
Format: 17-min talk followed by live Q&A (done)
Etherpad: <https://pad.emacsconf.org/2022-science>
Discuss on IRC: [#emacsconf-gen](https://chat.emacsconf.org/?join=emacsconf,emacsconf-gen)
Status: TO_INDEX_QA
<div>Times in different timezones:</div><div class="times" start="2022-12-03T15:45:00Z" end="2022-12-03T16:05:00Z"><div class="conf-time">Saturday, Dec 3 2022, ~10:45 AM - 11:05 AM EST (US/Eastern)</div><div class="others"><div>which is the same as:</div>Saturday, Dec 3 2022, ~9:45 AM - 10:05 AM CST (US/Central)<br />Saturday, Dec 3 2022, ~8:45 AM - 9:05 AM MST (US/Mountain)<br />Saturday, Dec 3 2022, ~7:45 AM - 8:05 AM PST (US/Pacific)<br />Saturday, Dec 3 2022, ~3:45 PM - 4:05 PM UTC <br />Saturday, Dec 3 2022, ~4:45 PM - 5:05 PM CET (Europe/Paris)<br />Saturday, Dec 3 2022, ~5:45 PM - 6:05 PM EET (Europe/Athens)<br />Saturday, Dec 3 2022, ~9:15 PM - 9:35 PM IST (Asia/Kolkata)<br />Saturday, Dec 3 2022, ~11:45 PM - 12:05 AM +08 (Asia/Singapore)<br />Sunday, Dec 4 2022, ~12:45 AM - 1:05 AM JST (Asia/Tokyo)</div></div><div><a href="/2022/watch/gen/">Find out how to watch and participate</a></div>
# Talk
[[!template id="vid" vidid="science-mainVideo" src="https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.webm" poster="${poster}" captions="""<track label="English" kind="captions" srclang="en" src="/2022/captions/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.vtt" default />"""
size="121M" duration="16:45" other_resources="""[Download --main.webm (121MB)](https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.webm)
[Download --main.org](https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.org)
[Download --main.vtt](https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.vtt)
[Download --main--chapters.vtt](https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main--chapters.vtt)
[View transcript](https://emacsconf.org/2022/talks/science#science-mainVideo-transcript)
[View on Toobnix](https://toobnix.org/w/v8ypuDbDai4WJYu5CbVRYc)
"""]]
[[!template id="chapters" vidid="science-mainVideo" data="""
00:00:00.000 My second brain
00:28.320 Contents of the talk
01:40.560 Bibliography management
02:35.200 Creating literature notes: ivy-bibtex-edit-notes
03:04.960 org-roam reference template
04:40.160 Demo
05:40.840 Annotating with org-noter
06:44.240 Annotating in English
07:02.120 Afterthoughts on an article
07:30.200 Adding a note
08:21.480 Creating permanent notes from reference material
09:01.680 The organization problem
09:21.520 zetteldesk.el
10:43.600 The zetteldesk-desktop
11:45.040 Filtering with ivy-bibtex
12:09.840 Inserting literature
13:46.200 Composing the final article
15:19.160 Thanks
"""]]
# Q&A
[[!template id="vid" vidid="science-qanda" src="https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--answers.webm" poster="${poster}" ${captions}
size="13M" duration="16:45" other_resources=""""""]]
# Description
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