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diff --git a/2024/talks/project.md b/2024/talks/project.md index 84f2959a..826294a9 100644 --- a/2024/talks/project.md +++ b/2024/talks/project.md @@ -77,14 +77,14 @@ He will discuss the features of the writing log and the joys of editing it in Or - Q: \<gringo\> What does Zettelkasten mean? - A: \<vidianos\> It\'s a notetaking method \<Neil\>Useful overview at - [https://zettelkasten.de/introduction/](https://zettelkasten.de/introduction/){rel="noreferrer noopener"} + [https://zettelkasten.de/introduction/](https://zettelkasten.de/introduction/) - A: Pls cf. - [https://en.wikipedia.org/wiki/Zettelkasten](https://en.wikipedia.org/wiki/Zettelkasten){rel="noreferrer noopener"} + [https://en.wikipedia.org/wiki/Zettelkasten](https://en.wikipedia.org/wiki/Zettelkasten) An augmented org-roam is found in the zetteldesk.el project by Vidianos - [https://github.com/Vidianos-Giannitsis/zetteldesk.el](https://github.com/Vidianos-Giannitsis/zetteldesk.el){rel="noreferrer noopener"}. + [https://github.com/Vidianos-Giannitsis/zetteldesk.el](https://github.com/Vidianos-Giannitsis/zetteldesk.el). See his talk from EmacsConf 2022: - [https://www.youtube.com/watch?v=dJ859kiFRLg&t=0s](https://www.youtube.com/watch?v=dJ859kiFRLg&t=0s){rel="noreferrer noopener"} + [https://www.youtube.com/watch?v=dJ859kiFRLg&t=0s](https://www.youtube.com/watch?v=dJ859kiFRLg&t=0s) - A: A great resource is Sönke Ahrens\'s \"How to Take Smart Notes\" (to get you thinking about the progressive evolution of your note taking; and a solid walk through of Zettlekasten in @@ -97,7 +97,7 @@ He will discuss the features of the writing log and the joys of editing it in Or applied in ways that were never intended. I think that these vairant approaches are innovative and can enhance productivity, but they can cause some confusion. The ultimate source is the - [https://niklas-luhmann-archiv.de/](https://niklas-luhmann-archiv.de/){rel="noreferrer noopener"}. + [https://niklas-luhmann-archiv.de/](https://niklas-luhmann-archiv.de/). - Smart notes are linked to one another. They make up a kind of hypertext, similar to a wiki, as a whole. - Org-Roam and Denote are two implementations that can support the @@ -116,11 +116,11 @@ He will discuss the features of the writing log and the joys of editing it in Or in 2000. I have not yet moved all of my workflow to Emacs, but I am getting there. The other site that I use when I exceed the 5000 word limit at 750words.com is WriteHoney - [https://app.writehoney.com/write](https://app.writehoney.com/write){rel="noreferrer noopener"}. + [https://app.writehoney.com/write](https://app.writehoney.com/write). - Whisper AI to transcribe the recordings. See this site for the post transcription scripts that I apply to clean up the text before I see the trasncript: - [https://github.com/MooersLab/bash-whisper-transcription](https://github.com/MooersLab/bash-whisper-transcription){rel="noreferrer noopener"}. + [https://github.com/MooersLab/bash-whisper-transcription](https://github.com/MooersLab/bash-whisper-transcription). I also jot down notes but not so much after I started using the digitial voice recorder (DVR). Dragging the audo file to the folder where I do the transcriptions does take a wee bit of time @@ -163,7 +163,7 @@ He will discuss the features of the writing log and the joys of editing it in Or agenda searches. I use a Elisp function to add new \*\*\*TODO items to the list when they come to mind. I will post this function shortly on the AAAreadme of - [https://github.com/MooersLab/writingLogTemplateInOrg](https://github.com/MooersLab/writingLogTemplateInOrg){rel="noreferrer noopener"}. + [https://github.com/MooersLab/writingLogTemplateInOrg](https://github.com/MooersLab/writingLogTemplateInOrg). This eliminates the need to refile the idea, which I am too undisciplined to do. - Q: I actually love this one! But it creates as much separated log as @@ -193,21 +193,21 @@ He will discuss the features of the writing log and the joys of editing it in Or published that particular project yet, but a number of related PyMOL projects are on my GitHub site. The most popular is MooersLab/PyMOLshortcuts - [https://github.com/MooersLab/pymolshortcuts](https://github.com/MooersLab/pymolshortcuts){rel="noreferrer noopener"}. + [https://github.com/MooersLab/pymolshortcuts](https://github.com/MooersLab/pymolshortcuts). The associated paper is here - [https://onlinelibrary.wiley.com/doi/10.1002/pro.3781](https://onlinelibrary.wiley.com/doi/10.1002/pro.3781){rel="noreferrer noopener"}. + [https://onlinelibrary.wiley.com/doi/10.1002/pro.3781](https://onlinelibrary.wiley.com/doi/10.1002/pro.3781). I have run PyMOL in Jupyter - [https://github.com/MooersLab/jupyterlabpymolpysnips](https://github.com/MooersLab/jupyterlabpymolpysnips){rel="noreferrer noopener"} - [https://pubmed.ncbi.nlm.nih.gov/33967632/](https://pubmed.ncbi.nlm.nih.gov/33967632/){rel="noreferrer noopener"} + [https://github.com/MooersLab/jupyterlabpymolpysnips](https://github.com/MooersLab/jupyterlabpymolpysnips) + [https://pubmed.ncbi.nlm.nih.gov/33967632/](https://pubmed.ncbi.nlm.nih.gov/33967632/) , Colab - [https://github.com/MooersLab/colabOpenSourcePyMOLpySnips](https://github.com/MooersLab/colabOpenSourcePyMOLpySnips){rel="noreferrer noopener"} - [https://proceedings.scipy.org/articles/majora-1b6fd038-002](https://proceedings.scipy.org/articles/majora-1b6fd038-002){rel="noreferrer noopener"}, + [https://github.com/MooersLab/colabOpenSourcePyMOLpySnips](https://github.com/MooersLab/colabOpenSourcePyMOLpySnips) + [https://proceedings.scipy.org/articles/majora-1b6fd038-002](https://proceedings.scipy.org/articles/majora-1b6fd038-002), RStudio - [https://github.com/MooersLab/rstudiopymolpysnips](https://github.com/MooersLab/rstudiopymolpysnips){rel="noreferrer noopener"}, + [https://github.com/MooersLab/rstudiopymolpysnips](https://github.com/MooersLab/rstudiopymolpysnips), and Org-mode - [https://github.com/MooersLab/orgpymolpysnips](https://github.com/MooersLab/orgpymolpysnips){rel="noreferrer noopener"}. + [https://github.com/MooersLab/orgpymolpysnips](https://github.com/MooersLab/orgpymolpysnips). I gave a talk about the later at emacsconf 2021 - [https://emacsconf.org/2021/talks/molecular/](https://emacsconf.org/2021/talks/molecular/){rel="noreferrer noopener"}. + [https://emacsconf.org/2021/talks/molecular/](https://emacsconf.org/2021/talks/molecular/). - \<jsiegel62\> Q: Have you tweaked your Emacs configuration at all \-- with cus keybindings, etc \-- to support the process you demonstrated? Thank for the good question because my talk was @@ -228,7 +228,7 @@ He will discuss the features of the writing log and the joys of editing it in Or - Hey :) - Hello from Madagascar :) Hello from Brazil (there\'s an old song about madagascar: - [https://www.youtube.com/watch?v=k206JIkXJbk](https://www.youtube.com/watch?v=k206JIkXJbk){rel="noreferrer noopener"}) + [https://www.youtube.com/watch?v=k206JIkXJbk](https://www.youtube.com/watch?v=k206JIkXJbk)) :) Hello from Uganda Hello from ISS\^\^ The International Space Station? 0_0 Hello from US Hello world and outer space!!!! - It\'s so awesome seeing these talks that are not strictly software @@ -236,7 +236,7 @@ He will discuss the features of the writing log and the joys of editing it in Or - It\'s amazing to see how much people do with emacs Thank you! - \<Neil\> \[MooersLab/writingLogTemplateInOrg: Template for writing.log in - org-mode\]([https://github.com/MooersLab/writingLogTemplateInOrg](https://github.com/MooersLab/writingLogTemplateInOrg){rel="noreferrer noopener"}) + org-mode\]([https://github.com/MooersLab/writingLogTemplateInOrg](https://github.com/MooersLab/writingLogTemplateInOrg)) - \<mickeynp\> it\'s really impressive. it also makes me realise that people are a lot more organised than could ever be. I have been studying time management for decades; it is still a stuggle for me. @@ -255,7 +255,7 @@ He will discuss the features of the writing log and the joys of editing it in Or - \<jsiegel62\> There is a package \-- I think it is \'org-tracktable \-- that records word counts by session in an inline block within org files - [https://github.com/tty-tourist/org-tracktable](https://github.com/tty-tourist/org-tracktable){rel="noreferrer noopener"} + [https://github.com/tty-tourist/org-tracktable](https://github.com/tty-tourist/org-tracktable) i will check it out. Thank you for the link! My time tracking databse has 10,848 rows after 2.5 years. It may be over 100,000 rows long by the time that I expire. I decided that a org-mode table @@ -267,7 +267,7 @@ He will discuss the features of the writing log and the joys of editing it in Or for Heat Map of Journal article writing to effort. This is a long bash alias to to script and commands that generate the heatmap and post it on Github. The GitHub repo for the script is here - [https://github.com/MooersLab/writing-time-spent-heatmap](https://github.com/MooersLab/writing-time-spent-heatmap){rel="noreferrer noopener"}. + [https://github.com/MooersLab/writing-time-spent-heatmap](https://github.com/MooersLab/writing-time-spent-heatmap). I have similar aliases for makng heatmps for grant writing, teaching, and service, but my daily focus is on article writing. - \<\_viz\> oohhh using a drawer for stashing these details away is a |