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diff --git a/2022/info/science-after.md b/2022/info/science-after.md index 4ed6be72..d006e22d 100644 --- a/2022/info/science-after.md +++ b/2022/info/science-after.md @@ -1,6 +1,395 @@ <!-- Automatically generated by emacsconf-publish-after-page --> +<a name="science-mainVideo-transcript"></a> +# Transcript + +[[!template new="1" text="Hello everyone, I'm Vidianos." start="00:00:00.000" video="mainVideo-science" id="subtitle"]] +[[!template text="Today I'm going to show you" start="00:00:02.040" video="mainVideo-science" id="subtitle"]] +[[!template text="how I write and organize" start="00:00:03.080" video="mainVideo-science" id="subtitle"]] +[[!template text="my literature notes using Emacs." start="00:00:04.080" video="mainVideo-science" id="subtitle"]] +[[!template text="I take my notes using Zettelkasten," start="00:00:06.440" video="mainVideo-science" id="subtitle"]] +[[!template text="which you may or may not have heard." start="00:00:08.720" video="mainVideo-science" id="subtitle"]] +[[!template text="It is about taking small atomic notes" start="00:00:11.080" video="mainVideo-science" id="subtitle"]] +[[!template text="and linking them one another" start="00:00:13.840" video="mainVideo-science" id="subtitle"]] +[[!template text="to create your so-called second brain." start="00:00:15.000" video="mainVideo-science" id="subtitle"]] +[[!template text="Here is mine." start="00:00:17.600" video="mainVideo-science" id="subtitle"]] +[[!template text="This is a graph of all the notes" start="00:00:19.160" video="mainVideo-science" id="subtitle"]] +[[!template text="I have accumulated the last few years." start="00:00:20.720" video="mainVideo-science" id="subtitle"]] +[[!template text="It has various types of notes," start="00:00:22.880" video="mainVideo-science" id="subtitle"]] +[[!template text="but we're mainly going to focus on" start="00:00:25.200" video="mainVideo-science" id="subtitle"]] +[[!template text="literature notes today." start="00:00:25.960" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="Here are the contents of my talk." start="00:00:28.320" video="mainVideo-science" id="subtitle"]] +[[!template text="We're going to start" start="00:00:29.640" video="mainVideo-science" id="subtitle"]] +[[!template text="with bibliography management," start="00:00:30.440" video="mainVideo-science" id="subtitle"]] +[[!template text="which is how I take bibliography" start="00:00:31.920" video="mainVideo-science" id="subtitle"]] +[[!template text="from the web and import it to Emacs." start="00:00:33.320" video="mainVideo-science" id="subtitle"]] +[[!template text="Then we're going to talk about" start="00:00:35.960" video="mainVideo-science" id="subtitle"]] +[[!template text="how I create literature notes" start="00:00:37.080" video="mainVideo-science" id="subtitle"]] +[[!template text="using a custom org-roam-bibtex template I have." start="00:00:38.880" video="mainVideo-science" id="subtitle"]] +[[!template text="And after talking about that," start="00:00:42.760" video="mainVideo-science" id="subtitle"]] +[[!template text="we can talk about how I write literature notes," start="00:00:43.920" video="mainVideo-science" id="subtitle"]] +[[!template text="which is through annotating an article" start="00:00:46.360" video="mainVideo-science" id="subtitle"]] +[[!template text="using org-noter. Org-noter is a package" start="00:00:48.240" video="mainVideo-science" id="subtitle"]] +[[!template text="that allows you to annotate PDFs" start="00:00:51.320" video="mainVideo-science" id="subtitle"]] +[[!template text="using the Org format" start="00:00:53.440" video="mainVideo-science" id="subtitle"]] +[[!template text="and creates a supplementary Org file to your PDF." start="00:00:55.000" video="mainVideo-science" id="subtitle"]] +[[!template text="Then we're going to talk about" start="00:00:59.560" video="mainVideo-science" id="subtitle"]] +[[!template text="adding the literature to your Zettelkasten," start="00:01:00.880" video="mainVideo-science" id="subtitle"]] +[[!template text="which is a simple but important topic," start="00:01:03.520" video="mainVideo-science" id="subtitle"]] +[[!template text="and how you can write permanent notes" start="00:01:06.280" video="mainVideo-science" id="subtitle"]] +[[!template text="based on the info you obtain from this literature." start="00:01:08.600" video="mainVideo-science" id="subtitle"]] +[[!template text="Lastly, we're going to focus on" start="00:01:11.720" video="mainVideo-science" id="subtitle"]] +[[!template text="the organization problem" start="00:01:13.320" video="mainVideo-science" id="subtitle"]] +[[!template text="one might find when having a lot of literature" start="00:01:15.000" video="mainVideo-science" id="subtitle"]] +[[!template text="for an assignment or an article or something," start="00:01:17.720" video="mainVideo-science" id="subtitle"]] +[[!template text="and how I have tried to solve this" start="00:01:21.440" video="mainVideo-science" id="subtitle"]] +[[!template text="with my package Zetteldesk." start="00:01:22.960" video="mainVideo-science" id="subtitle"]] +[[!template text="This isn't the perfect solution," start="00:01:24.840" video="mainVideo-science" id="subtitle"]] +[[!template text="but it is what I have, and I really like it." start="00:01:26.360" video="mainVideo-science" id="subtitle"]] +[[!template text="Finally, we're going to talk about" start="00:01:29.800" video="mainVideo-science" id="subtitle"]] +[[!template text="how to compose the final article" start="00:01:30.840" video="mainVideo-science" id="subtitle"]] +[[!template text="that you want to produce" start="00:01:33.560" video="mainVideo-science" id="subtitle"]] +[[!template text="using this literature" start="00:01:35.200" video="mainVideo-science" id="subtitle"]] +[[!template text="with the technique described" start="00:01:36.800" video="mainVideo-science" id="subtitle"]] +[[!template text="in the rest of this talk." start="00:01:38.640" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="So let's begin the talk" start="00:01:40.560" video="mainVideo-science" id="subtitle"]] +[[!template text="with bibliography management." start="00:01:42.240" video="mainVideo-science" id="subtitle"]] +[[!template text="Zotero is the bibliography manager I use." start="00:01:44.240" video="mainVideo-science" id="subtitle"]] +[[!template text="It is very simple to store articles with it," start="00:01:47.240" video="mainVideo-science" id="subtitle"]] +[[!template text="and it exports to .bib," start="00:01:49.400" video="mainVideo-science" id="subtitle"]] +[[!template text="integrating with packages" start="00:01:50.680" video="mainVideo-science" id="subtitle"]] +[[!template text="such as org-roam-bibtex and ivy-bibtex." start="00:01:52.080" video="mainVideo-science" id="subtitle"]] +[[!template text="When researching, I typically find" start="00:01:54.960" video="mainVideo-science" id="subtitle"]] +[[!template text="a long list of articles from a search engine." start="00:01:56.680" video="mainVideo-science" id="subtitle"]] +[[!template text="I open the titles which have interesting titles" start="00:02:00.040" video="mainVideo-science" id="subtitle"]] +[[!template text="through their abstracts" start="00:02:03.440" video="mainVideo-science" id="subtitle"]] +[[!template text="and save to Zotero those whose abstracts" start="00:02:05.040" video="mainVideo-science" id="subtitle"]] +[[!template text="are the most relevant to what I want." start="00:02:07.800" video="mainVideo-science" id="subtitle"]] +[[!template text="From these articles," start="00:02:10.320" video="mainVideo-science" id="subtitle"]] +[[!template text="I typically won't read all of them" start="00:02:11.800" video="mainVideo-science" id="subtitle"]] +[[!template text="because they're a lot," start="00:02:13.360" video="mainVideo-science" id="subtitle"]] +[[!template text="but I will select a few," start="00:02:14.520" video="mainVideo-science" id="subtitle"]] +[[!template text="once I have collected as many as I want." start="00:02:17.760" video="mainVideo-science" id="subtitle"]] +[[!template text="Zotero acts as a way to store everything" start="00:02:21.640" video="mainVideo-science" id="subtitle"]] +[[!template text="that might be interesting," start="00:02:24.080" video="mainVideo-science" id="subtitle"]] +[[!template text="while Emacs and my Zettelkasten" start="00:02:25.480" video="mainVideo-science" id="subtitle"]] +[[!template text="stores everything that is definitely interesting," start="00:02:28.520" video="mainVideo-science" id="subtitle"]] +[[!template text="and I have read it already." start="00:02:30.960" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="And then we can move to" start="00:02:35.200" video="mainVideo-science" id="subtitle"]] +[[!template text="how I create literature notes." start="00:02:36.360" video="mainVideo-science" id="subtitle"]] +[[!template text="I set the default action of ivy-bibtex" start="00:02:38.560" video="mainVideo-science" id="subtitle"]] +[[!template text="to ivy-bibtex-edit-notes," start="00:02:41.120" video="mainVideo-science" id="subtitle"]] +[[!template text="which will prompt-- which" start="00:02:43.600" video="mainVideo-science" id="subtitle"]] +[[!template text="with org-roam-bibtex-mode active," start="00:02:44.920" video="mainVideo-science" id="subtitle"]] +[[!template text="prompts you for an org-capture template" start="00:02:46.480" video="mainVideo-science" id="subtitle"]] +[[!template text="when selecting something" start="00:02:48.840" video="mainVideo-science" id="subtitle"]] +[[!template text="if the node doesn't exist," start="00:02:50.800" video="mainVideo-science" id="subtitle"]] +[[!template text="or takes you to the existing node." start="00:02:52.320" video="mainVideo-science" id="subtitle"]] +[[!template text="And obviously you need to have this here," start="00:02:54.960" video="mainVideo-science" id="subtitle"]] +[[!template text="to set the default action" start="00:02:58.440" video="mainVideo-science" id="subtitle"]] +[[!template text="that was already there" start="00:03:00.800" video="mainVideo-science" id="subtitle"]] +[[!template text="to a letter." start="00:03:02.600" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="Then we can move to my org-roam reference template," start="00:03:04.960" video="mainVideo-science" id="subtitle"]] +[[!template text="using org-roam-bibtex." start="00:03:08.040" video="mainVideo-science" id="subtitle"]] +[[!template text="This isn't so complicated," start="00:03:11.160" video="mainVideo-science" id="subtitle"]] +[[!template text="but it has some important stuff" start="00:03:12.440" video="mainVideo-science" id="subtitle"]] +[[!template text="I want to highlight." start="00:03:14.120" video="mainVideo-science" id="subtitle"]] +[[!template text="Save it to the ref directory," start="00:03:14.880" video="mainVideo-science" id="subtitle"]] +[[!template text="so I can remember where it is," start="00:03:17.400" video="mainVideo-science" id="subtitle"]] +[[!template text="and it's classified as a literature note." start="00:03:19.720" video="mainVideo-science" id="subtitle"]] +[[!template text="The file name is the cite key," start="00:03:23.560" video="mainVideo-science" id="subtitle"]] +[[!template text="which is easy and small," start="00:03:25.120" video="mainVideo-science" id="subtitle"]] +[[!template text="but the title is the actual article's title." start="00:03:27.760" video="mainVideo-science" id="subtitle"]] +[[!template text="Give it a tag of the entry-type;" start="00:03:30.080" video="mainVideo-science" id="subtitle"]] +[[!template text="this is typically "article,"" start="00:03:32.320" video="mainVideo-science" id="subtitle"]] +[[!template text="but it's easy to sort things this way" start="00:03:35.040" video="mainVideo-science" id="subtitle"]] +[[!template text="because not all literature notes are articles." start="00:03:37.480" video="mainVideo-science" id="subtitle"]] +[[!template text="And then give the keywords" start="00:03:41.400" video="mainVideo-science" id="subtitle"]] +[[!template text="that are given by Zotero, because why not?" start="00:03:43.160" video="mainVideo-science" id="subtitle"]] +[[!template text="Tags here are tags from Zettelkasten." start="00:03:47.360" video="mainVideo-science" id="subtitle"]] +[[!template text="These are the links to" start="00:03:51.480" video="mainVideo-science" id="subtitle"]] +[[!template text="other files which are relevant," start="00:03:53.640" video="mainVideo-science" id="subtitle"]] +[[!template text="but its initialization is empty, obviously." start="00:03:55.360" video="mainVideo-science" id="subtitle"]] +[[!template text="And then this heading is where" start="00:03:58.080" video="mainVideo-science" id="subtitle"]] +[[!template text="all the magic happens." start="00:03:59.840" video="mainVideo-science" id="subtitle"]] +[[!template text="The name is just not really so relevant;" start="00:04:00.840" video="mainVideo-science" id="subtitle"]] +[[!template text="I just needed something that made sense." start="00:04:04.720" video="mainVideo-science" id="subtitle"]] +[[!template text="The properties are what matters," start="00:04:07.560" video="mainVideo-science" id="subtitle"]] +[[!template text="and mainly this one here." start="00:04:10.400" video="mainVideo-science" id="subtitle"]] +[[!template text="The ${file} attribute finds" start="00:04:12.240" video="mainVideo-science" id="subtitle"]] +[[!template text="the file of this specific literature" start="00:04:18.880" video="mainVideo-science" id="subtitle"]] +[[!template text="and makes sure that org-noter works" start="00:04:24.800" video="mainVideo-science" id="subtitle"]] +[[!template text="by default here." start="00:04:27.520" video="mainVideo-science" id="subtitle"]] +[[!template text="As I'm going to show you in a moment," start="00:04:29.640" video="mainVideo-science" id="subtitle"]] +[[!template text="this way [of] initializing the literature note," start="00:04:32.560" video="mainVideo-science" id="subtitle"]] +[[!template text="org-noter works by default." start="00:04:34.600" video="mainVideo-science" id="subtitle"]] +[[!template text="That's all, basically, for the template." start="00:04:37.000" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="This is the point of the talk" start="00:04:40.160" video="mainVideo-science" id="subtitle"]] +[[!template text="where we reach the first demo." start="00:04:42.760" video="mainVideo-science" id="subtitle"]] +[[!template text="This is about opening ivy-bibtex," start="00:04:44.040" video="mainVideo-science" id="subtitle"]] +[[!template text="selecting an article I want to annotate," start="00:04:47.080" video="mainVideo-science" id="subtitle"]] +[[!template text="initializing the literature note." start="00:04:50.240" video="mainVideo-science" id="subtitle"]] +[[!template text="We can see that everything" start="00:04:53.000" video="mainVideo-science" id="subtitle"]] +[[!template text="is inserted in for me," start="00:04:55.000" video="mainVideo-science" id="subtitle"]] +[[!template text="and if I open org-noter on this heading," start="00:04:56.480" video="mainVideo-science" id="subtitle"]] +[[!template text="it opens the article, as expected." start="00:05:01.080" video="mainVideo-science" id="subtitle"]] +[[!template text="I can read the article," start="00:05:03.760" video="mainVideo-science" id="subtitle"]] +[[!template text="I can say I want to" start="00:05:06.200" video="mainVideo-science" id="subtitle"]] +[[!template text="annotate something here." start="00:05:08.440" video="mainVideo-science" id="subtitle"]] +[[!template text="Obviously, annotation is not that simple as here," start="00:05:20.720" video="mainVideo-science" id="subtitle"]] +[[!template text="but I don't really have the time" start="00:05:24.120" video="mainVideo-science" id="subtitle"]] +[[!template text="to actually annotate an article live." start="00:05:26.480" video="mainVideo-science" id="subtitle"]] +[[!template text="But you can keep going, and it's a good setup." start="00:05:28.600" video="mainVideo-science" id="subtitle"]] +[[!template text="Then close org-noter," start="00:05:34.040" video="mainVideo-science" id="subtitle"]] +[[!template text="and let's go presentation again." start="00:05:39.880" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="Moving on, this section is some stuff" start="00:05:40.840" video="mainVideo-science" id="subtitle"]] +[[!template text="about my annotation process." start="00:05:44.360" video="mainVideo-science" id="subtitle"]] +[[!template text="As I said, there is not enough time for me" start="00:05:45.800" video="mainVideo-science" id="subtitle"]] +[[!template text="to actually annotate an article live," start="00:05:49.480" video="mainVideo-science" id="subtitle"]] +[[!template text="but here are some things about it." start="00:05:51.120" video="mainVideo-science" id="subtitle"]] +[[!template text="First, is that I annotate with org-noter," start="00:05:53.000" video="mainVideo-science" id="subtitle"]] +[[!template text="which I absolutely love." start="00:05:55.480" video="mainVideo-science" id="subtitle"]] +[[!template text="It is great for annotations" start="00:05:56.720" video="mainVideo-science" id="subtitle"]] +[[!template text="because you do them in org," start="00:05:59.600" video="mainVideo-science" id="subtitle"]] +[[!template text="which is an amazing format" start="00:06:02.520" video="mainVideo-science" id="subtitle"]] +[[!template text="and gives you a lot of flexibility," start="00:06:03.880" video="mainVideo-science" id="subtitle"]] +[[!template text="such as adding to the Zettelkasten," start="00:06:05.880" video="mainVideo-science" id="subtitle"]] +[[!template text="being initialized by a capture template," start="00:06:07.840" video="mainVideo-science" id="subtitle"]] +[[!template text="and other things." start="00:06:11.320" video="mainVideo-science" id="subtitle"]] +[[!template text="But also, you don't need to look for" start="00:06:13.120" video="mainVideo-science" id="subtitle"]] +[[!template text="the notes inside the PDF," start="00:06:15.960" video="mainVideo-science" id="subtitle"]] +[[!template text="which is a problem you can have" start="00:06:17.360" video="mainVideo-science" id="subtitle"]] +[[!template text="if you annotate on the PDF," start="00:06:19.520" video="mainVideo-science" id="subtitle"]] +[[!template text="and it is very annoying in my opinion." start="00:06:20.960" video="mainVideo-science" id="subtitle"]] +[[!template text="So I prefer having these notes," start="00:06:23.080" video="mainVideo-science" id="subtitle"]] +[[!template text="and I can only focus on them," start="00:06:26.440" video="mainVideo-science" id="subtitle"]] +[[!template text="but I can also see where they refer." start="00:06:27.880" video="mainVideo-science" id="subtitle"]] +[[!template text="The other scenarios are not so good." start="00:06:29.760" video="mainVideo-science" id="subtitle"]] +[[!template text="Annotating on the PDF," start="00:06:33.200" video="mainVideo-science" id="subtitle"]] +[[!template text="you search for it," start="00:06:35.520" video="mainVideo-science" id="subtitle"]] +[[!template text="and if you don't know which section it refers to," start="00:06:36.480" video="mainVideo-science" id="subtitle"]] +[[!template text="then you need to look about it," start="00:06:41.200" video="mainVideo-science" id="subtitle"]] +[[!template text="and that is very tiring." start="00:06:42.760" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="Also, I am always annotating in English." start="00:06:44.240" video="mainVideo-science" id="subtitle"]] +[[!template text="This is not my mother tongue," start="00:06:48.360" video="mainVideo-science" id="subtitle"]] +[[!template text="but it helps me avoid" start="00:06:50.200" video="mainVideo-science" id="subtitle"]] +[[!template text="the necessary mental overhead" start="00:06:52.040" video="mainVideo-science" id="subtitle"]] +[[!template text="of translating while reading." start="00:06:53.680" video="mainVideo-science" id="subtitle"]] +[[!template text="I want to pay attention to what I read" start="00:06:55.200" video="mainVideo-science" id="subtitle"]] +[[!template text="and not to translate stuff." start="00:06:57.560" video="mainVideo-science" id="subtitle"]] +[[!template text="I will translate later." start="00:06:59.680" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="And when finishing an article," start="00:07:02.120" video="mainVideo-science" id="subtitle"]] +[[!template text="I write a mini-abstract myself," start="00:07:05.040" video="mainVideo-science" id="subtitle"]] +[[!template text="which contains what I think about the article." start="00:07:07.720" video="mainVideo-science" id="subtitle"]] +[[!template text="It doesn't need to be much," start="00:07:10.120" video="mainVideo-science" id="subtitle"]] +[[!template text="it's usually like 3 or 4 paragraphs," start="00:07:11.640" video="mainVideo-science" id="subtitle"]] +[[!template text="and it shows things that are useful in the article," start="00:07:14.000" video="mainVideo-science" id="subtitle"]] +[[!template text="and what is mentioned that matters to me." start="00:07:18.320" video="mainVideo-science" id="subtitle"]] +[[!template text="So I can look back at it," start="00:07:21.160" video="mainVideo-science" id="subtitle"]] +[[!template text="and it is very easy for me to find" start="00:07:22.600" video="mainVideo-science" id="subtitle"]] +[[!template text="what I got from this article," start="00:07:24.920" video="mainVideo-science" id="subtitle"]] +[[!template text="so where I will cite it on my actual project." start="00:07:26.600" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="Then last thing you need to do" start="00:07:30.200" video="mainVideo-science" id="subtitle"]] +[[!template text="is add a note to your Zettelkasten." start="00:07:33.880" video="mainVideo-science" id="subtitle"]] +[[!template text="This is very easy due to it being in an org format." start="00:07:35.480" video="mainVideo-science" id="subtitle"]] +[[!template text="You can just have it in the org-roam directory," start="00:07:38.040" video="mainVideo-science" id="subtitle"]] +[[!template text="which it automatically goes to," start="00:07:41.800" video="mainVideo-science" id="subtitle"]] +[[!template text="and link it to other relevant notes," start="00:07:43.640" video="mainVideo-science" id="subtitle"]] +[[!template text="which is its index" start="00:07:46.560" video="mainVideo-science" id="subtitle"]] +[[!template text="because everything in my Zettelkasten" start="00:07:48.520" video="mainVideo-science" id="subtitle"]] +[[!template text="(at least) has an index," start="00:07:50.560" video="mainVideo-science" id="subtitle"]] +[[!template text="but also every other permanent note" start="00:07:51.720" video="mainVideo-science" id="subtitle"]] +[[!template text="whose contents are in one way or another" start="00:07:54.520" video="mainVideo-science" id="subtitle"]] +[[!template text="mentioned inside the article." start="00:07:56.760" video="mainVideo-science" id="subtitle"]] +[[!template text="This way the article is in a network with notes" start="00:07:58.080" video="mainVideo-science" id="subtitle"]] +[[!template text="that are similar to it." start="00:08:00.360" video="mainVideo-science" id="subtitle"]] +[[!template text="Then we move on to the second demo," start="00:08:02.040" video="mainVideo-science" id="subtitle"]] +[[!template text="which is about a full-fledged literature note." start="00:08:05.360" video="mainVideo-science" id="subtitle"]] +[[!template text="We can go on org-roam-node-find," start="00:08:08.040" video="mainVideo-science" id="subtitle"]] +[[!template text="search for references," start="00:08:11.120" video="mainVideo-science" id="subtitle"]] +[[!template text="go to this, and you can see" start="00:08:13.160" video="mainVideo-science" id="subtitle"]] +[[!template text="it is linked to other notes." start="00:08:15.560" video="mainVideo-science" id="subtitle"]] +[[!template text="And here is the mini-abstract," start="00:08:17.760" video="mainVideo-science" id="subtitle"]] +[[!template text="and here are my notes on it." start="00:08:20.040" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="The last thing you need to do" start="00:08:21.480" video="mainVideo-science" id="subtitle"]] +[[!template text="when creating a literature note," start="00:08:27.520" video="mainVideo-science" id="subtitle"]] +[[!template text="is obviously create permanent notes" start="00:08:29.120" video="mainVideo-science" id="subtitle"]] +[[!template text="based on what you read." start="00:08:31.320" video="mainVideo-science" id="subtitle"]] +[[!template text="If you never create these literature notes," start="00:08:32.280" video="mainVideo-science" id="subtitle"]] +[[!template text="you will never get new information." start="00:08:35.680" video="mainVideo-science" id="subtitle"]] +[[!template text="So for your Zettelkasten to grow," start="00:08:37.680" video="mainVideo-science" id="subtitle"]] +[[!template text="you need to create such notes." start="00:08:40.440" video="mainVideo-science" id="subtitle"]] +[[!template text="This means that the subject you are researching" start="00:08:42.360" video="mainVideo-science" id="subtitle"]] +[[!template text="is not just literature notes" start="00:08:45.880" video="mainVideo-science" id="subtitle"]] +[[!template text="but has well-structured permanent notes," start="00:08:47.800" video="mainVideo-science" id="subtitle"]] +[[!template text="which is what you will actually read." start="00:08:50.280" video="mainVideo-science" id="subtitle"]] +[[!template text="You typically only read literature notes" start="00:08:52.800" video="mainVideo-science" id="subtitle"]] +[[!template text="to see what gets cited where." start="00:08:55.160" video="mainVideo-science" id="subtitle"]] +[[!template text="What you will mostly read" start="00:08:57.160" video="mainVideo-science" id="subtitle"]] +[[!template text="is these permanent notes" start="00:08:58.760" video="mainVideo-science" id="subtitle"]] +[[!template text="that you create from this knowledge." start="00:08:59.840" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="So finally we are at the last part of the talk," start="00:09:01.680" video="mainVideo-science" id="subtitle"]] +[[!template text="which is about organizing literature notes." start="00:09:05.240" video="mainVideo-science" id="subtitle"]] +[[!template text="And this is in my opinion" start="00:09:07.360" video="mainVideo-science" id="subtitle"]] +[[!template text="the most interesting part" start="00:09:09.560" video="mainVideo-science" id="subtitle"]] +[[!template text="because it is very unique." start="00:09:10.880" video="mainVideo-science" id="subtitle"]] +[[!template text="It uses a package I wrote myself," start="00:09:12.200" video="mainVideo-science" id="subtitle"]] +[[!template text="and it doesn't have as much usage" start="00:09:14.720" video="mainVideo-science" id="subtitle"]] +[[!template text="as the rest of the things I described so far." start="00:09:18.320" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="So what is the problem you might find?" start="00:09:21.520" video="mainVideo-science" id="subtitle"]] +[[!template text="Indeed, if you read a lot of things," start="00:09:24.800" video="mainVideo-science" id="subtitle"]] +[[!template text="you have a large collection of notes," start="00:09:27.960" video="mainVideo-science" id="subtitle"]] +[[!template text="and it's not the only thing you will think about." start="00:09:30.960" video="mainVideo-science" id="subtitle"]] +[[!template text="However, you do need to" start="00:09:33.920" video="mainVideo-science" id="subtitle"]] +[[!template text="justify everything with citations," start="00:09:36.080" video="mainVideo-science" id="subtitle"]] +[[!template text="so you need to remember everything" start="00:09:37.800" video="mainVideo-science" id="subtitle"]] +[[!template text="you read in these notes." start="00:09:39.880" video="mainVideo-science" id="subtitle"]] +[[!template text="You have done a lot of work," start="00:09:41.120" video="mainVideo-science" id="subtitle"]] +[[!template text="but there is still a lot for you" start="00:09:43.520" video="mainVideo-science" id="subtitle"]] +[[!template text="to reach your final manuscript." start="00:09:45.920" video="mainVideo-science" id="subtitle"]] +[[!template text="Except if there was a handy little way" start="00:09:47.320" video="mainVideo-science" id="subtitle"]] +[[!template text="to combine everything" start="00:09:50.360" video="mainVideo-science" id="subtitle"]] +[[!template text="and sort it in a very easy way." start="00:09:52.880" video="mainVideo-science" id="subtitle"]] +[[!template text="Well, there is," start="00:09:55.880" video="mainVideo-science" id="subtitle"]] +[[!template text="and I think it came out pretty well." start="00:09:56.960" video="mainVideo-science" id="subtitle"]] +[[!template text="It's zetteldesk.el." start="00:10:00.120" video="mainVideo-science" id="subtitle"]] +[[!template text="It was inspired by this quote here" start="00:10:01.800" video="mainVideo-science" id="subtitle"]] +[[!template text="from How to Take Smart Notes." start="00:10:05.040" video="mainVideo-science" id="subtitle"]] +[[!template text="Sönke Ahrens here talked about a desktop," start="00:10:06.480" video="mainVideo-science" id="subtitle"]] +[[!template text="which you have all the literature" start="00:10:09.800" video="mainVideo-science" id="subtitle"]] +[[!template text="you want in that desktop," start="00:10:13.080" video="mainVideo-science" id="subtitle"]] +[[!template text="and you try to bring it in order." start="00:10:16.240" video="mainVideo-science" id="subtitle"]] +[[!template text="And by doing that," start="00:10:20.080" video="mainVideo-science" id="subtitle"]] +[[!template text="you can improve your ideas" start="00:10:22.600" video="mainVideo-science" id="subtitle"]] +[[!template text="and have a structure" start="00:10:24.840" video="mainVideo-science" id="subtitle"]] +[[!template text="so that your manuscript will then be" start="00:10:27.520" video="mainVideo-science" id="subtitle"]] +[[!template text="very, very easy to write." start="00:10:30.920" video="mainVideo-science" id="subtitle"]] +[[!template text="And as I say here, in trying to do this," start="00:10:33.880" video="mainVideo-science" id="subtitle"]] +[[!template text="I made something much more general" start="00:10:36.280" video="mainVideo-science" id="subtitle"]] +[[!template text="than it needed to be, so yeah," start="00:10:38.920" video="mainVideo-science" id="subtitle"]] +[[!template text="you can use it for many other things." start="00:10:41.560" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="But before I show you some things about it," start="00:10:43.600" video="mainVideo-science" id="subtitle"]] +[[!template text="I want to introduce you to what a desktop is." start="00:10:46.960" video="mainVideo-science" id="subtitle"]] +[[!template text="It's essentially a collection of the knowledge" start="00:10:49.880" video="mainVideo-science" id="subtitle"]] +[[!template text="you want to be able to see." start="00:10:53.160" video="mainVideo-science" id="subtitle"]] +[[!template text="You add things to your Zetteldesk," start="00:10:54.840" video="mainVideo-science" id="subtitle"]] +[[!template text="and using filter functions," start="00:10:58.000" video="mainVideo-science" id="subtitle"]] +[[!template text="you only see these notes and nothing else," start="00:11:01.680" video="mainVideo-science" id="subtitle"]] +[[!template text="which in my opinion is very handy." start="00:11:04.920" video="mainVideo-science" id="subtitle"]] +[[!template text="So having said that," start="00:11:07.360" video="mainVideo-science" id="subtitle"]] +[[!template text="we can see these things in action" start="00:11:10.320" video="mainVideo-science" id="subtitle"]] +[[!template text="for the final demo of the talk." start="00:11:12.480" video="mainVideo-science" id="subtitle"]] +[[!template text="This is the third one." start="00:11:14.400" video="mainVideo-science" id="subtitle"]] +[[!template text="I will go to an index file of mine." start="00:11:15.840" video="mainVideo-science" id="subtitle"]] +[[!template text="This is 3D printing," start="00:11:20.880" video="mainVideo-science" id="subtitle"]] +[[!template text="an assignment I had last semester." start="00:11:21.960" video="mainVideo-science" id="subtitle"]] +[[!template text="And this has 28 backlinks," start="00:11:23.480" video="mainVideo-science" id="subtitle"]] +[[!template text="so a lot of things that I looked at" start="00:11:27.040" video="mainVideo-science" id="subtitle"]] +[[!template text="for this assignment." start="00:11:30.400" video="mainVideo-science" id="subtitle"]] +[[!template text="I can say I want to add" start="00:11:31.800" video="mainVideo-science" id="subtitle"]] +[[!template text="the current note's backlinks to the Zetteldesk," start="00:11:33.520" video="mainVideo-science" id="subtitle"]] +[[!template text="and now I have a filtered version" start="00:11:35.800" video="mainVideo-science" id="subtitle"]] +[[!template text="of org-roam-node-find defined," start="00:11:38.240" video="mainVideo-science" id="subtitle"]] +[[!template text="which only lists these 29 notes." start="00:11:40.120" video="mainVideo-science" id="subtitle"]] +[[!template text="Very nice, right?" start="00:11:42.000" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="I can also filter just the literature notes," start="00:11:45.040" video="mainVideo-science" id="subtitle"]] +[[!template text="which can also use other UIs beside org-roam," start="00:11:49.160" video="mainVideo-science" id="subtitle"]] +[[!template text="such as, for example," start="00:11:56.000" video="mainVideo-science" id="subtitle"]] +[[!template text="one I use a lot is the ivy-bibtex command." start="00:11:57.440" video="mainVideo-science" id="subtitle"]] +[[!template text="This takes a lot of time," start="00:12:00.040" video="mainVideo-science" id="subtitle"]] +[[!template text="much longer than the org-roam one," start="00:12:03.240" video="mainVideo-science" id="subtitle"]] +[[!template text="but has them in this UI," start="00:12:04.600" video="mainVideo-science" id="subtitle"]] +[[!template text="which in a lot of cases is more useful for me." start="00:12:06.480" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="The other very important thing is inserting these." start="00:12:09.840" video="mainVideo-science" id="subtitle"]] +[[!template text="For example, say I want to insert a permanent note," start="00:12:15.720" video="mainVideo-science" id="subtitle"]] +[[!template text="such as this." start="00:12:20.000" video="mainVideo-science" id="subtitle"]] +[[!template text="Its title will become a top-level heading," start="00:12:21.760" video="mainVideo-science" id="subtitle"]] +[[!template text="and everything else will be inserted as expected." start="00:12:25.400" video="mainVideo-science" id="subtitle"]] +[[!template text="But the most important thing for us" start="00:12:29.320" video="mainVideo-science" id="subtitle"]] +[[!template text="is inserting literature, right?" start="00:12:35.400" video="mainVideo-science" id="subtitle"]] +[[!template text="This is done with this command," start="00:12:37.160" video="mainVideo-science" id="subtitle"]] +[[!template text="and let's say I want to insert this." start="00:12:39.520" video="mainVideo-science" id="subtitle"]] +[[!template text="The title again becomes a heading," start="00:12:42.720" video="mainVideo-science" id="subtitle"]] +[[!template text="and this is the article title also." start="00:12:48.240" video="mainVideo-science" id="subtitle"]] +[[!template text="I store the cite key here," start="00:12:50.840" video="mainVideo-science" id="subtitle"]] +[[!template text="and everything else about it is also here." start="00:12:53.040" video="mainVideo-science" id="subtitle"]] +[[!template text="And I can add others," start="00:12:56.320" video="mainVideo-science" id="subtitle"]] +[[!template text="for example, this and this." start="00:12:58.240" video="mainVideo-science" id="subtitle"]] +[[!template text="And we have all of them here." start="00:13:01.200" video="mainVideo-science" id="subtitle"]] +[[!template text="I see it says this is the basic," start="00:13:09.040" video="mainVideo-science" id="subtitle"]] +[[!template text="so let's put it at the top." start="00:13:11.280" video="mainVideo-science" id="subtitle"]] +[[!template text="And then maybe I want to put this last." start="00:13:12.800" video="mainVideo-science" id="subtitle"]] +[[!template text="And this way, you can sort things," start="00:13:18.840" video="mainVideo-science" id="subtitle"]] +[[!template text="and typically, on the other side," start="00:13:24.160" video="mainVideo-science" id="subtitle"]] +[[!template text="I have a manuscript," start="00:13:26.320" video="mainVideo-science" id="subtitle"]] +[[!template text="and I look at what order" start="00:13:27.720" video="mainVideo-science" id="subtitle"]] +[[!template text="I want to have things in" start="00:13:30.000" video="mainVideo-science" id="subtitle"]] +[[!template text="and sort the articles and the permanent notes" start="00:13:31.160" video="mainVideo-science" id="subtitle"]] +[[!template text="in a way so that each section can have" start="00:13:34.800" video="mainVideo-science" id="subtitle"]] +[[!template text="its own citations and its own notes," start="00:13:38.360" video="mainVideo-science" id="subtitle"]] +[[!template text="which makes writing, again, very easy, in my opinion." start="00:13:41.800" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="Finally, let's go to composing the final article." start="00:13:46.200" video="mainVideo-science" id="subtitle"]] +[[!template text="This is our goal: we wrote and organized" start="00:13:53.720" video="mainVideo-science" id="subtitle"]] +[[!template text="all these literature notes" start="00:13:57.280" video="mainVideo-science" id="subtitle"]] +[[!template text="to put them in your final project." start="00:13:58.360" video="mainVideo-science" id="subtitle"]] +[[!template text="This might be an assignment" start="00:14:00.400" video="mainVideo-science" id="subtitle"]] +[[!template text="or an actual scientific article." start="00:14:01.880" video="mainVideo-science" id="subtitle"]] +[[!template text="It is apparent that you have done" start="00:14:04.440" video="mainVideo-science" id="subtitle"]] +[[!template text="a lot of work for this so far," start="00:14:07.480" video="mainVideo-science" id="subtitle"]] +[[!template text="but you don't need to do a lot more." start="00:14:09.080" video="mainVideo-science" id="subtitle"]] +[[!template text="In my opinion, this is the easiest part" start="00:14:12.280" video="mainVideo-science" id="subtitle"]] +[[!template text="of the whole workflow." start="00:14:14.080" video="mainVideo-science" id="subtitle"]] +[[!template text="People consider final article composition hard," start="00:14:15.520" video="mainVideo-science" id="subtitle"]] +[[!template text="but if you've done all these steps," start="00:14:19.280" video="mainVideo-science" id="subtitle"]] +[[!template text="you already have everything you want" start="00:14:21.240" video="mainVideo-science" id="subtitle"]] +[[!template text="to add in the article from your notes." start="00:14:23.440" video="mainVideo-science" id="subtitle"]] +[[!template text="It's already there," start="00:14:25.640" video="mainVideo-science" id="subtitle"]] +[[!template text="a lot of things are copy-pasted," start="00:14:27.720" video="mainVideo-science" id="subtitle"]] +[[!template text="it's all in a coherent order," start="00:14:30.760" video="mainVideo-science" id="subtitle"]] +[[!template text="connections are to an extent already there," start="00:14:34.040" video="mainVideo-science" id="subtitle"]] +[[!template text="and you know what citation goes where," start="00:14:38.440" video="mainVideo-science" id="subtitle"]] +[[!template text="so you can justify everything you write." start="00:14:41.600" video="mainVideo-science" id="subtitle"]] +[[!template text="The actual draft isn't there," start="00:14:44.200" video="mainVideo-science" id="subtitle"]] +[[!template text="but it is very easy" start="00:14:46.800" video="mainVideo-science" id="subtitle"]] +[[!template text="because now you just write things as you see them" start="00:14:48.520" video="mainVideo-science" id="subtitle"]] +[[!template text="in your desktop and connect them." start="00:14:52.600" video="mainVideo-science" id="subtitle"]] +[[!template text="Connections are basic--" start="00:14:54.440" video="mainVideo-science" id="subtitle"]] +[[!template text="connections and making the article good, obviously," start="00:14:56.960" video="mainVideo-science" id="subtitle"]] +[[!template text="are basically the only thing you need to worry," start="00:14:59.440" video="mainVideo-science" id="subtitle"]] +[[!template text="but those are very important" start="00:15:02.400" video="mainVideo-science" id="subtitle"]] +[[!template text="because others will only see the final manuscript," start="00:15:05.920" video="mainVideo-science" id="subtitle"]] +[[!template text="so if that's not good," start="00:15:09.040" video="mainVideo-science" id="subtitle"]] +[[!template text="then the whole assignment is not good, obviously." start="00:15:11.080" video="mainVideo-science" id="subtitle"]] +[[!template text="So it's not like your work is done," start="00:15:14.080" video="mainVideo-science" id="subtitle"]] +[[!template text="it's just very easy." start="00:15:17.520" video="mainVideo-science" id="subtitle"]] +[[!template new="1" text="And with that, I hope you liked my talk" start="00:15:19.160" video="mainVideo-science" id="subtitle"]] +[[!template text="because it is coming to an end now." start="00:15:23.280" video="mainVideo-science" id="subtitle"]] +[[!template text="I want to thank you for your time;" start="00:15:25.520" video="mainVideo-science" id="subtitle"]] +[[!template text="I hope you enjoyed it." start="00:15:27.920" video="mainVideo-science" id="subtitle"]] +[[!template text="You can feel free to email me at this address;" start="00:15:29.680" video="mainVideo-science" id="subtitle"]] +[[!template text="it has also been on every slide since the beginning." start="00:15:32.520" video="mainVideo-science" id="subtitle"]] +[[!template text="I also have the GitHub for zetteldesk.el here," start="00:15:35.640" video="mainVideo-science" id="subtitle"]] +[[!template text="and I will be available for questions." start="00:15:40.240" video="mainVideo-science" id="subtitle"]] +[[!template text="I will be viewing both the pad and the IRC" start="00:15:42.520" video="mainVideo-science" id="subtitle"]] +[[!template text="and will do a live Q&A after this. See you." start="00:15:45.000" video="mainVideo-science" id="subtitle"]] +[[!template text="Actually, before I go," start="00:15:49.160" video="mainVideo-science" id="subtitle"]] +[[!template text="let's show you the GitHub for zetteldesk.el." start="00:15:51.280" video="mainVideo-science" id="subtitle"]] +[[!template text="Here's the README; if you're interested on it," start="00:15:54.200" video="mainVideo-science" id="subtitle"]] +[[!template text="you can see more about it," start="00:15:57.120" video="mainVideo-science" id="subtitle"]] +[[!template text="and also I have a very in-depth wiki about it" start="00:15:58.520" video="mainVideo-science" id="subtitle"]] +[[!template text="with 11 pages, and talking about everything" start="00:16:02.560" video="mainVideo-science" id="subtitle"]] +[[!template text="that happens here." start="00:16:06.520" video="mainVideo-science" id="subtitle"]] +[[!template text="A lot of what we discussed is in this section" start="00:16:08.080" video="mainVideo-science" id="subtitle"]] +[[!template text="about literature notes." start="00:16:11.760" video="mainVideo-science" id="subtitle"]] +[[!template text="These documents go a lot more in-depth" start="00:16:12.920" video="mainVideo-science" id="subtitle"]] +[[!template text="in how Zetteldesk works, and also how to use it," start="00:16:17.200" video="mainVideo-science" id="subtitle"]] +[[!template text="so if you're interested, feel free to read them," start="00:16:22.800" video="mainVideo-science" id="subtitle"]] +[[!template text="and if you have any problems," start="00:16:27.720" video="mainVideo-science" id="subtitle"]] +[[!template text="you can open an issue about it;" start="00:16:30.240" video="mainVideo-science" id="subtitle"]] +[[!template text="I will be very active. Thank you." start="00:16:31.840" video="mainVideo-science" id="subtitle"]] + + Questions or comments? Please e-mail [vidianosgiannitsis@gmail.com](mailto:vidianosgiannitsis@gmail.com?subject=Comment%20for%20EmacsConf%202022%20science%3A%20Writing%20and%20organizing%20literature%20notes%20for%20scientific%20writing) diff --git a/2022/info/science-before.md b/2022/info/science-before.md index 9d19f701..91d8092f 100644 --- a/2022/info/science-before.md +++ b/2022/info/science-before.md @@ -10,9 +10,38 @@ The following image shows where the talk is in the schedule for Sat 2022-12-03. Format: 17-min talk followed by live Q&A (<https://emacsconf.org/current/science/room>) Etherpad: <https://pad.emacsconf.org/2022-science> Discuss on IRC: [#emacsconf-gen](https://chat.emacsconf.org/?join=emacsconf,emacsconf-gen) -Status: Talk captioned +Status: Now playing on the conference livestream <div>Times in different timezones:</div><div class="times" start="2022-12-03T15:45:00Z" end="2022-12-03T16:05:00Z"><div class="conf-time">Saturday, Dec 3 2022, ~10:45 AM - 11:05 AM EST (US/Eastern)</div><div class="others"><div>which is the same as:</div>Saturday, Dec 3 2022, ~9:45 AM - 10:05 AM CST (US/Central)<br />Saturday, Dec 3 2022, ~8:45 AM - 9:05 AM MST (US/Mountain)<br />Saturday, Dec 3 2022, ~7:45 AM - 8:05 AM PST (US/Pacific)<br />Saturday, Dec 3 2022, ~3:45 PM - 4:05 PM UTC <br />Saturday, Dec 3 2022, ~4:45 PM - 5:05 PM CET (Europe/Paris)<br />Saturday, Dec 3 2022, ~5:45 PM - 6:05 PM EET (Europe/Athens)<br />Saturday, Dec 3 2022, ~9:15 PM - 9:35 PM IST (Asia/Kolkata)<br />Saturday, Dec 3 2022, ~11:45 PM - 12:05 AM +08 (Asia/Singapore)<br />Sunday, Dec 4 2022, ~12:45 AM - 1:05 AM JST (Asia/Tokyo)</div></div><div><a href="/2022/watch/gen/">Find out how to watch and participate</a></div> +[[!template id="vid" vidid="science-mainVideo" src="https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.webm" poster="https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.png" captions="""<track label="English" kind="captions" srclang="en" src="/2022/captions/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.vtt" default />""" +size="121M" duration="16:45" other_resources="""[Download --main.webm (121MB)](https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.webm) +[Download --main.org](https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.org) +[Download --main.vtt](https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main.vtt) +[Download --main--chapters.vtt](https://media.emacsconf.org/2022/emacsconf-2022-science--writing-and-organizing-literature-notes-for-scientific-writing--vidianos--main--chapters.vtt) +[View transcript](https://emacsconf.org/2022/talks/science#science-mainVideo-transcript) +[View on Toobnix](https://toobnix.org/w/v8ypuDbDai4WJYu5CbVRYc) +"""]] +[[!template id="chapters" vidid="science-mainVideo" data=""" +00:00:00.000 My second brain +00:28.320 Contents of the talk +01:40.560 Bibliography management +02:35.200 Creating literature notes: ivy-bibtex-edit-notes +03:04.960 org-roam reference template +04:40.160 Demo +05:40.840 Annotating with org-noter +06:44.240 Annotating in English +07:02.120 Afterthoughts on an article +07:30.200 Adding a note +08:21.480 Creating permanent notes from reference material +09:01.680 The organization problem +09:21.520 zetteldesk.el +10:43.600 The zetteldesk-desktop +11:45.040 Filtering with ivy-bibtex +12:09.840 Inserting literature +13:46.200 Composing the final article +15:19.160 Thanks + +"""]] # Description |